miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25040 3' -57.2 NC_005336.1 + 5428 0.7 0.600212
Target:  5'- cGGGcACgugGCGCgUCAGCGCGGUcGC-CAc -3'
miRNA:   3'- -CUC-UGa--CGCGaAGUCGCGCCA-CGaGU- -5'
25040 3' -57.2 NC_005336.1 + 10392 0.66 0.800024
Target:  5'- cGGGCUGU-CUUCgaaggcGGCGCGGaGCUCGg -3'
miRNA:   3'- cUCUGACGcGAAG------UCGCGCCaCGAGU- -5'
25040 3' -57.2 NC_005336.1 + 10542 0.67 0.743212
Target:  5'- cGGGGCUaGCGCgUCGGUGC-GUGCgUCGa -3'
miRNA:   3'- -CUCUGA-CGCGaAGUCGCGcCACG-AGU- -5'
25040 3' -57.2 NC_005336.1 + 13305 0.68 0.708288
Target:  5'- gGAGACgagggcggcggggaUGUGCgaguuuucagggUUGGUGCGGUGCUCGc -3'
miRNA:   3'- -CUCUG--------------ACGCGa-----------AGUCGCGCCACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 15763 0.67 0.752984
Target:  5'- aGGGCgGCGCgcaCGGCGCGcguGUGCUUg -3'
miRNA:   3'- cUCUGaCGCGaa-GUCGCGC---CACGAGu -5'
25040 3' -57.2 NC_005336.1 + 20285 0.67 0.78161
Target:  5'- uGGGGCUGCGggagugCGGcCGCGGUGUcCAu -3'
miRNA:   3'- -CUCUGACGCgaa---GUC-GCGCCACGaGU- -5'
25040 3' -57.2 NC_005336.1 + 20932 0.67 0.750063
Target:  5'- aAGACUGUgggcgauuuuauguGCgugUCAGCGCGG-GCUg- -3'
miRNA:   3'- cUCUGACG--------------CGa--AGUCGCGCCaCGAgu -5'
25040 3' -57.2 NC_005336.1 + 21479 0.66 0.829865
Target:  5'- -cGACgcGCGCUUCAuggagguggccgcgcGCGCGGccgaGCUCGc -3'
miRNA:   3'- cuCUGa-CGCGAAGU---------------CGCGCCa---CGAGU- -5'
25040 3' -57.2 NC_005336.1 + 25799 0.68 0.723378
Target:  5'- uGGAUUGCGCUUUcuguuuacacuGGCGCugguGGUGgUCAg -3'
miRNA:   3'- cUCUGACGCGAAG-----------UCGCG----CCACgAGU- -5'
25040 3' -57.2 NC_005336.1 + 26485 0.67 0.78161
Target:  5'- -cGGCcGCGUUcccgUCGGCGuCGGUGCUg- -3'
miRNA:   3'- cuCUGaCGCGA----AGUCGC-GCCACGAgu -5'
25040 3' -57.2 NC_005336.1 + 27546 0.66 0.826458
Target:  5'- -cGACgGCGUUgUCGGCGCGGcGCg-- -3'
miRNA:   3'- cuCUGaCGCGA-AGUCGCGCCaCGagu -5'
25040 3' -57.2 NC_005336.1 + 32467 0.71 0.529002
Target:  5'- aGAGA-UGCGCcgCAGCGC-GUGCUCu -3'
miRNA:   3'- -CUCUgACGCGaaGUCGCGcCACGAGu -5'
25040 3' -57.2 NC_005336.1 + 32879 0.7 0.559225
Target:  5'- -----aGCGCggCGGCGCGGUcGCUCGu -3'
miRNA:   3'- cucugaCGCGaaGUCGCGCCA-CGAGU- -5'
25040 3' -57.2 NC_005336.1 + 33306 0.66 0.817816
Target:  5'- cGGAgaGCGCggagacUAGCGCGGUGUgcuUCGc -3'
miRNA:   3'- cUCUgaCGCGaa----GUCGCGCCACG---AGU- -5'
25040 3' -57.2 NC_005336.1 + 34164 0.7 0.579642
Target:  5'- aGAGACcaUGCGg--CAGUacGCGGUGCUCGu -3'
miRNA:   3'- -CUCUG--ACGCgaaGUCG--CGCCACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 35055 0.7 0.569411
Target:  5'- aGAGcAC-GCGCUcgCAGaagaCGCGGUGCUCGa -3'
miRNA:   3'- -CUC-UGaCGCGAa-GUC----GCGCCACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 38346 0.66 0.79089
Target:  5'- aGGGCUggaagGCGCg-CAGCGUGGgcgUGCUCGg -3'
miRNA:   3'- cUCUGA-----CGCGaaGUCGCGCC---ACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 42107 0.74 0.359876
Target:  5'- cGAGGCUGCGCUcgagcgugcggaucuUgGGCGUGGUguacgGCUCGa -3'
miRNA:   3'- -CUCUGACGCGA---------------AgUCGCGCCA-----CGAGU- -5'
25040 3' -57.2 NC_005336.1 + 44109 0.69 0.63123
Target:  5'- cGGACgcGCGUUUguGCGCGGagcGCUCGc -3'
miRNA:   3'- cUCUGa-CGCGAAguCGCGCCa--CGAGU- -5'
25040 3' -57.2 NC_005336.1 + 44305 0.67 0.747133
Target:  5'- cAGACUGCGCagcugcugggcuaCGGCGCGaGUGCg-- -3'
miRNA:   3'- cUCUGACGCGaa-----------GUCGCGC-CACGagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.