miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25040 3' -57.2 NC_005336.1 + 38346 0.66 0.79089
Target:  5'- aGGGCUggaagGCGCg-CAGCGUGGgcgUGCUCGg -3'
miRNA:   3'- cUCUGA-----CGCGaaGUCGCGCC---ACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 10542 0.67 0.743212
Target:  5'- cGGGGCUaGCGCgUCGGUGC-GUGCgUCGa -3'
miRNA:   3'- -CUCUGA-CGCGaAGUCGCGcCACG-AGU- -5'
25040 3' -57.2 NC_005336.1 + 44305 0.67 0.747133
Target:  5'- cAGACUGCGCagcugcugggcuaCGGCGCGaGUGCg-- -3'
miRNA:   3'- cUCUGACGCGaa-----------GUCGCGC-CACGagu -5'
25040 3' -57.2 NC_005336.1 + 99495 0.67 0.752984
Target:  5'- --cGCUGCGCgggUCGGCGCGccGCUgGa -3'
miRNA:   3'- cucUGACGCGa--AGUCGCGCcaCGAgU- -5'
25040 3' -57.2 NC_005336.1 + 72309 0.67 0.772193
Target:  5'- -cGGCgUGCGCgugaUCcGCGaGGUGCUCAa -3'
miRNA:   3'- cuCUG-ACGCGa---AGuCGCgCCACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 134436 0.67 0.772193
Target:  5'- gGAcGCUGCuGCUggcgguugccgCAGUGaCGGUGCUCGg -3'
miRNA:   3'- -CUcUGACG-CGAa----------GUCGC-GCCACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 129538 0.67 0.78161
Target:  5'- aGGACUGCggccgcgccgaGC-UCGccucCGCGGUGCUCAa -3'
miRNA:   3'- cUCUGACG-----------CGaAGUc---GCGCCACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 134306 0.67 0.78161
Target:  5'- -cGACUGCGCgu-GGCGCuGGUGaaCAg -3'
miRNA:   3'- cuCUGACGCGaagUCGCG-CCACgaGU- -5'
25040 3' -57.2 NC_005336.1 + 26485 0.67 0.78161
Target:  5'- -cGGCcGCGUUcccgUCGGCGuCGGUGCUg- -3'
miRNA:   3'- cuCUGaCGCGA----AGUCGC-GCCACGAgu -5'
25040 3' -57.2 NC_005336.1 + 134128 0.68 0.723378
Target:  5'- aGAGACgcuggcgGCGCUccCGGcCGCGGacagGCUCGc -3'
miRNA:   3'- -CUCUGa------CGCGAa-GUC-GCGCCa---CGAGU- -5'
25040 3' -57.2 NC_005336.1 + 94173 0.68 0.723378
Target:  5'- gGAGAUUcCGCggUCGGCGCcGGUGCg-- -3'
miRNA:   3'- -CUCUGAcGCGa-AGUCGCG-CCACGagu -5'
25040 3' -57.2 NC_005336.1 + 61013 0.68 0.703223
Target:  5'- -cGGCUGCGCguggugCGGcCGaUGGUGUUCAg -3'
miRNA:   3'- cuCUGACGCGaa----GUC-GC-GCCACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 103503 0.74 0.372893
Target:  5'- cGAGG-UGCGCaucaacUUCGGCGCGGgccgGCUCAu -3'
miRNA:   3'- -CUCUgACGCG------AAGUCGCGCCa---CGAGU- -5'
25040 3' -57.2 NC_005336.1 + 70368 0.74 0.389607
Target:  5'- -uGGCUgaacaacuccugGCGCUUCAGCGCGGaggagucGCUCAu -3'
miRNA:   3'- cuCUGA------------CGCGAAGUCGCGCCa------CGAGU- -5'
25040 3' -57.2 NC_005336.1 + 122748 0.73 0.415581
Target:  5'- uGAGGCUGCGCUcgcCGGCcuGCGGcUGUUCGc -3'
miRNA:   3'- -CUCUGACGCGAa--GUCG--CGCC-ACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 32467 0.71 0.529002
Target:  5'- aGAGA-UGCGCcgCAGCGC-GUGCUCu -3'
miRNA:   3'- -CUCUgACGCGaaGUCGCGcCACGAGu -5'
25040 3' -57.2 NC_005336.1 + 32879 0.7 0.559225
Target:  5'- -----aGCGCggCGGCGCGGUcGCUCGu -3'
miRNA:   3'- cucugaCGCGaaGUCGCGCCA-CGAGU- -5'
25040 3' -57.2 NC_005336.1 + 125709 0.69 0.620879
Target:  5'- -cGGCgGCGCUcuucgUCAGCGgagaccaGGUGCUCGa -3'
miRNA:   3'- cuCUGaCGCGA-----AGUCGCg------CCACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 74457 0.69 0.620879
Target:  5'- aGAGAC-GCGCUcgcccgcgCGGCGCGuGcUGCUCGc -3'
miRNA:   3'- -CUCUGaCGCGAa-------GUCGCGC-C-ACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 44109 0.69 0.63123
Target:  5'- cGGACgcGCGUUUguGCGCGGagcGCUCGc -3'
miRNA:   3'- cUCUGa-CGCGAAguCGCGCCa--CGAGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.