Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25041 | 3' | -53.2 | NC_005336.1 | + | 44203 | 0.67 | 0.956065 |
Target: 5'- -uGUCUGcccGcgCGgcGAGACCCC-GCGCCc -3' miRNA: 3'- ggUAGAC---CuaGU--UUCUGGGGuCGCGG- -5' |
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25041 | 3' | -53.2 | NC_005336.1 | + | 44501 | 0.67 | 0.951645 |
Target: 5'- gCCGUg-GGcgCGGgcuaugcagacccGGACCCCGGCGUg -3' miRNA: 3'- -GGUAgaCCuaGUU-------------UCUGGGGUCGCGg -5' |
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25041 | 3' | -53.2 | NC_005336.1 | + | 45495 | 0.66 | 0.966699 |
Target: 5'- gCCGUCgaaGGG-CGAcGACCCCGccaCGCCc -3' miRNA: 3'- -GGUAGa--CCUaGUUuCUGGGGUc--GCGG- -5' |
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25041 | 3' | -53.2 | NC_005336.1 | + | 46604 | 0.71 | 0.794773 |
Target: 5'- aCAUCUGGAcCAucGugCCgcuCAGCGCg -3' miRNA: 3'- gGUAGACCUaGUuuCugGG---GUCGCGg -5' |
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25041 | 3' | -53.2 | NC_005336.1 | + | 51345 | 0.66 | 0.966699 |
Target: 5'- aCGUCgccGaGGUCGAugucGGCCUCGGCgGCCa -3' miRNA: 3'- gGUAGa--C-CUAGUUu---CUGGGGUCG-CGG- -5' |
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25041 | 3' | -53.2 | NC_005336.1 | + | 53382 | 0.68 | 0.92293 |
Target: 5'- aCCGUCUuccaGGucuUCAacGAGACCUCGGuCGCg -3' miRNA: 3'- -GGUAGA----CCu--AGU--UUCUGGGGUC-GCGg -5' |
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25041 | 3' | -53.2 | NC_005336.1 | + | 54162 | 0.67 | 0.956065 |
Target: 5'- cUCGUCgGGcgCGuccGGCCCgGGCGCg -3' miRNA: 3'- -GGUAGaCCuaGUuu-CUGGGgUCGCGg -5' |
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25041 | 3' | -53.2 | NC_005336.1 | + | 55546 | 0.67 | 0.956065 |
Target: 5'- uCCAaCcGGA-CAGucGCCCCuAGCGCCa -3' miRNA: 3'- -GGUaGaCCUaGUUucUGGGG-UCGCGG- -5' |
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25041 | 3' | -53.2 | NC_005336.1 | + | 55769 | 0.67 | 0.943329 |
Target: 5'- gCCGgagcCUGGccaGAAGACCUUcucgGGCGCCg -3' miRNA: 3'- -GGUa---GACCuagUUUCUGGGG----UCGCGG- -5' |
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25041 | 3' | -53.2 | NC_005336.1 | + | 56788 | 0.67 | 0.952059 |
Target: 5'- gCGcCUGGc-CAccAAGAUCCUGGCGCCg -3' miRNA: 3'- gGUaGACCuaGU--UUCUGGGGUCGCGG- -5' |
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25041 | 3' | -53.2 | NC_005336.1 | + | 58372 | 0.68 | 0.935644 |
Target: 5'- aCGUCUGGuucgcggcguacucgGUCGAGcucGACCCgccgCGGCGCUg -3' miRNA: 3'- gGUAGACC---------------UAGUUU---CUGGG----GUCGCGG- -5' |
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25041 | 3' | -53.2 | NC_005336.1 | + | 60097 | 0.71 | 0.785494 |
Target: 5'- aCCAUCUGGG----AGACCuCCGGCGa- -3' miRNA: 3'- -GGUAGACCUaguuUCUGG-GGUCGCgg -5' |
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25041 | 3' | -53.2 | NC_005336.1 | + | 64172 | 0.66 | 0.9698 |
Target: 5'- gCGUC-GGcUCuGGGACCCaggcGCGCCa -3' miRNA: 3'- gGUAGaCCuAGuUUCUGGGgu--CGCGG- -5' |
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25041 | 3' | -53.2 | NC_005336.1 | + | 64392 | 0.67 | 0.943329 |
Target: 5'- uUCAUCuUGGA-CAugaccuggaacGAGGCCUCGcuGCGCCa -3' miRNA: 3'- -GGUAG-ACCUaGU-----------UUCUGGGGU--CGCGG- -5' |
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25041 | 3' | -53.2 | NC_005336.1 | + | 64502 | 0.68 | 0.911247 |
Target: 5'- gCAcuUCgUGG-UCGcgcgccAGGACUCCGGCGCCg -3' miRNA: 3'- gGU--AG-ACCuAGU------UUCUGGGGUCGCGG- -5' |
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25041 | 3' | -53.2 | NC_005336.1 | + | 70624 | 0.7 | 0.85498 |
Target: 5'- cCCGUCgcgcgccgcgGGGUgGAAGcccACCaCCAGCGUCa -3' miRNA: 3'- -GGUAGa---------CCUAgUUUC---UGG-GGUCGCGG- -5' |
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25041 | 3' | -53.2 | NC_005336.1 | + | 71285 | 0.66 | 0.9698 |
Target: 5'- -aGUCUGGA-CAccAAGAUCC-AGCGCa -3' miRNA: 3'- ggUAGACCUaGU--UUCUGGGgUCGCGg -5' |
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25041 | 3' | -53.2 | NC_005336.1 | + | 75629 | 0.68 | 0.92293 |
Target: 5'- gCGcCUGGGUCccAGAgCCgacgCAGCGCCg -3' miRNA: 3'- gGUaGACCUAGuuUCUgGG----GUCGCGG- -5' |
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25041 | 3' | -53.2 | NC_005336.1 | + | 78235 | 0.66 | 0.972689 |
Target: 5'- gCCAggCUGGG-C-AGGugCCCGaCGCCg -3' miRNA: 3'- -GGUa-GACCUaGuUUCugGGGUcGCGG- -5' |
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25041 | 3' | -53.2 | NC_005336.1 | + | 81198 | 0.69 | 0.891892 |
Target: 5'- gCCGUgCUGcGG--GGGGACUCCGGCGUCg -3' miRNA: 3'- -GGUA-GAC-CUagUUUCUGGGGUCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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