miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25041 3' -53.2 NC_005336.1 + 6159 0.67 0.956065
Target:  5'- gCGUUUGaa-CAcguGGCCCCAGCGCUc -3'
miRNA:   3'- gGUAGACcuaGUuu-CUGGGGUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 7022 0.69 0.870414
Target:  5'- gCCAUCUGGAaguAGGAUcgguucacguaCCC-GCGCCg -3'
miRNA:   3'- -GGUAGACCUaguUUCUG-----------GGGuCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 9292 0.66 0.973786
Target:  5'- uUCGUCcgcgGGGUCGAAgagcacggggaucuuGACCUCcGCGCUg -3'
miRNA:   3'- -GGUAGa---CCUAGUUU---------------CUGGGGuCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 11204 0.67 0.943329
Target:  5'- gCGUCUauGAUCcGAGGCCaguacuccaCGGCGCCg -3'
miRNA:   3'- gGUAGAc-CUAGuUUCUGGg--------GUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 13237 0.68 0.911247
Target:  5'- cCCAUCUGcGcgCAGAGcucaACCgCAGUGaCCa -3'
miRNA:   3'- -GGUAGAC-CuaGUUUC----UGGgGUCGC-GG- -5'
25041 3' -53.2 NC_005336.1 + 17314 0.66 0.9698
Target:  5'- gCGUC-GGcGUCGugaGAGAgCCCAGCGUg -3'
miRNA:   3'- gGUAGaCC-UAGU---UUCUgGGGUCGCGg -5'
25041 3' -53.2 NC_005336.1 + 17382 0.75 0.603311
Target:  5'- aCCGUCaGGAUCu--GGCCCagcuucuccaGGCGCCg -3'
miRNA:   3'- -GGUAGaCCUAGuuuCUGGGg---------UCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 18758 0.66 0.969499
Target:  5'- gCGUCUGGugugcacgcacauGUCGGugacGGGCaCCCGGUgGCCg -3'
miRNA:   3'- gGUAGACC-------------UAGUU----UCUG-GGGUCG-CGG- -5'
25041 3' -53.2 NC_005336.1 + 19556 0.69 0.884963
Target:  5'- -uGUCUGGcgaAGAGcgcGCCgCAGCGCCg -3'
miRNA:   3'- ggUAGACCuagUUUC---UGGgGUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 25050 0.72 0.727152
Target:  5'- cUCGUCgGGcuucggggugGUCAGuGGCUCCGGCGCCu -3'
miRNA:   3'- -GGUAGaCC----------UAGUUuCUGGGGUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 27265 0.72 0.737145
Target:  5'- cCCGUCUGGGUC---GAUgUCAuGCGCCa -3'
miRNA:   3'- -GGUAGACCUAGuuuCUGgGGU-CGCGG- -5'
25041 3' -53.2 NC_005336.1 + 28955 0.68 0.917212
Target:  5'- cCCGUCagGGAagcgcugcgCAGcgcAGACCuguCCGGCGCCg -3'
miRNA:   3'- -GGUAGa-CCUa--------GUU---UCUGG---GGUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 32293 0.7 0.85498
Target:  5'- gCCGUgCUGG-UCAuGGACCuCCAGCagaaucucguaGCCg -3'
miRNA:   3'- -GGUA-GACCuAGUuUCUGG-GGUCG-----------CGG- -5'
25041 3' -53.2 NC_005336.1 + 34366 0.69 0.898584
Target:  5'- cCCGUgcCaGGAUCGAcGACgCCCAG-GCCg -3'
miRNA:   3'- -GGUA--GaCCUAGUUuCUG-GGGUCgCGG- -5'
25041 3' -53.2 NC_005336.1 + 35841 0.67 0.947815
Target:  5'- -uGUCcGcGAUCuugGAGGuCUCCAGCGCCu -3'
miRNA:   3'- ggUAGaC-CUAGu--UUCU-GGGGUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 37785 0.69 0.870414
Target:  5'- gCCAcgaUGGG-CGAGaACUCCGGCGCCg -3'
miRNA:   3'- -GGUag-ACCUaGUUUcUGGGGUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 38055 0.69 0.870414
Target:  5'- aCCG-CUGGAggggCGcgcGGCUCCAGCGCg -3'
miRNA:   3'- -GGUaGACCUa---GUuu-CUGGGGUCGCGg -5'
25041 3' -53.2 NC_005336.1 + 38447 0.67 0.952059
Target:  5'- gCCGcCUGGAUCGGccgccGCCCCguGGUGCUc -3'
miRNA:   3'- -GGUaGACCUAGUUuc---UGGGG--UCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 43072 0.66 0.966699
Target:  5'- gCCuuUCUccc-CAAAGACCCCGGCacuGCCg -3'
miRNA:   3'- -GGu-AGAccuaGUUUCUGGGGUCG---CGG- -5'
25041 3' -53.2 NC_005336.1 + 43934 0.67 0.952059
Target:  5'- aCCAUgUGuGuguUCGAgauaGGcGCCUCGGCGCCg -3'
miRNA:   3'- -GGUAgAC-Cu--AGUU----UC-UGGGGUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.