miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25041 3' -53.2 NC_005336.1 + 129598 1.14 0.002481
Target:  5'- gCCAUCUGGAUCAAAGACCCCAGCGCCu -3'
miRNA:   3'- -GGUAGACCUAGUUUCUGGGGUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 126650 0.8 0.326539
Target:  5'- aCCGUCUGccgcccacagccGA-CGAGGACCUCGGCGCCu -3'
miRNA:   3'- -GGUAGAC------------CUaGUUUCUGGGGUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 17382 0.75 0.603311
Target:  5'- aCCGUCaGGAUCu--GGCCCagcuucuccaGGCGCCg -3'
miRNA:   3'- -GGUAGaCCUAGuuuCUGGGg---------UCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 97151 0.73 0.717074
Target:  5'- gCCGgagCcGcGGUCGAAGACCUCcgcGGCGCCg -3'
miRNA:   3'- -GGUa--GaC-CUAGUUUCUGGGG---UCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 25050 0.72 0.727152
Target:  5'- cUCGUCgGGcuucggggugGUCAGuGGCUCCGGCGCCu -3'
miRNA:   3'- -GGUAGaCC----------UAGUUuCUGGGGUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 134269 0.72 0.737145
Target:  5'- gCUAgacCUGGGcgacugCGGAGACCCCAGagGCCg -3'
miRNA:   3'- -GGUa--GACCUa-----GUUUCUGGGGUCg-CGG- -5'
25041 3' -53.2 NC_005336.1 + 27265 0.72 0.737145
Target:  5'- cCCGUCUGGGUC---GAUgUCAuGCGCCa -3'
miRNA:   3'- -GGUAGACCUAGuuuCUGgGGU-CGCGG- -5'
25041 3' -53.2 NC_005336.1 + 101978 0.72 0.756836
Target:  5'- uCCAUCgugcucGaGAUCGAcgacgugaAGAUCUCGGCGCCg -3'
miRNA:   3'- -GGUAGa-----C-CUAGUU--------UCUGGGGUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 120761 0.71 0.776071
Target:  5'- gCCAg--GGAcuaccUCAGAGACCgcgucuccgacaCCGGCGCCu -3'
miRNA:   3'- -GGUagaCCU-----AGUUUCUGG------------GGUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 60097 0.71 0.785494
Target:  5'- aCCAUCUGGG----AGACCuCCGGCGa- -3'
miRNA:   3'- -GGUAGACCUaguuUCUGG-GGUCGCgg -5'
25041 3' -53.2 NC_005336.1 + 124907 0.71 0.785494
Target:  5'- aCgGUCUGGGUCu---GCCUCAGCGgCg -3'
miRNA:   3'- -GgUAGACCUAGuuucUGGGGUCGCgG- -5'
25041 3' -53.2 NC_005336.1 + 46604 0.71 0.794773
Target:  5'- aCAUCUGGAcCAucGugCCgcuCAGCGCg -3'
miRNA:   3'- gGUAGACCUaGUuuCugGG---GUCGCGg -5'
25041 3' -53.2 NC_005336.1 + 95643 0.7 0.846946
Target:  5'- uCCAUgugcUUGGcgCAgagcgccgcguAGGugUCCAGCGCCg -3'
miRNA:   3'- -GGUA----GACCuaGU-----------UUCugGGGUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 70624 0.7 0.85498
Target:  5'- cCCGUCgcgcgccgcgGGGUgGAAGcccACCaCCAGCGUCa -3'
miRNA:   3'- -GGUAGa---------CCUAgUUUC---UGG-GGUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 108925 0.7 0.85498
Target:  5'- gCCAcgCUGGA-CGAcGACCUCAuCGCCa -3'
miRNA:   3'- -GGUa-GACCUaGUUuCUGGGGUcGCGG- -5'
25041 3' -53.2 NC_005336.1 + 32293 0.7 0.85498
Target:  5'- gCCGUgCUGG-UCAuGGACCuCCAGCagaaucucguaGCCg -3'
miRNA:   3'- -GGUA-GACCuAGUuUCUGG-GGUCG-----------CGG- -5'
25041 3' -53.2 NC_005336.1 + 114991 0.7 0.862805
Target:  5'- aCGUgUGcGAg-GAGGGCCCCuggcGGCGCCg -3'
miRNA:   3'- gGUAgAC-CUagUUUCUGGGG----UCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 38055 0.69 0.870414
Target:  5'- aCCG-CUGGAggggCGcgcGGCUCCAGCGCg -3'
miRNA:   3'- -GGUaGACCUa---GUuu-CUGGGGUCGCGg -5'
25041 3' -53.2 NC_005336.1 + 37785 0.69 0.870414
Target:  5'- gCCAcgaUGGG-CGAGaACUCCGGCGCCg -3'
miRNA:   3'- -GGUag-ACCUaGUUUcUGGGGUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 7022 0.69 0.870414
Target:  5'- gCCAUCUGGAaguAGGAUcgguucacguaCCC-GCGCCg -3'
miRNA:   3'- -GGUAGACCUaguUUCUG-----------GGGuCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.