miRNA display CGI


Results 41 - 60 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25041 5' -56.9 NC_005336.1 + 15970 0.67 0.848348
Target:  5'- cCCGAgGCCaagugcGAGG-GCUCgCGCGCGuCc -3'
miRNA:   3'- -GGCUgUGG------CUCCaCGAGaGCGUGCuG- -5'
25041 5' -56.9 NC_005336.1 + 51175 0.67 0.848348
Target:  5'- aCCGGaACUGcAGGuUGaC-CUCGCGCGACg -3'
miRNA:   3'- -GGCUgUGGC-UCC-AC-GaGAGCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 7186 0.67 0.848348
Target:  5'- -aGAgACCGAGucggagcucGUGauagagCUCGCGCGACa -3'
miRNA:   3'- ggCUgUGGCUC---------CACga----GAGCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 99303 0.67 0.843596
Target:  5'- aCGACGCCGucacagaccaCUCuUCGCGCGACg -3'
miRNA:   3'- gGCUGUGGCuccac-----GAG-AGCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 13289 0.67 0.84039
Target:  5'- gCGuCGCCGccuAGGUGC---CGCGCGGCg -3'
miRNA:   3'- gGCuGUGGC---UCCACGagaGCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 125144 0.67 0.84039
Target:  5'- cCCgGACA-CGuGGUGCUCgCGCGCaGCg -3'
miRNA:   3'- -GG-CUGUgGCuCCACGAGaGCGUGcUG- -5'
25041 5' -56.9 NC_005336.1 + 125531 0.67 0.84039
Target:  5'- gCCG-CACCauggcGAGGUGCaUCgucgaUCGCGCGcACg -3'
miRNA:   3'- -GGCuGUGG-----CUCCACG-AG-----AGCGUGC-UG- -5'
25041 5' -56.9 NC_005336.1 + 103901 0.67 0.84039
Target:  5'- gCGGCACCGcGGcgGCgg-CGCcGCGACg -3'
miRNA:   3'- gGCUGUGGCuCCa-CGagaGCG-UGCUG- -5'
25041 5' -56.9 NC_005336.1 + 59530 0.67 0.84039
Target:  5'- gCGGCGCCGuGG-GCgaguucugCUCGCggcugugccGCGACu -3'
miRNA:   3'- gGCUGUGGCuCCaCGa-------GAGCG---------UGCUG- -5'
25041 5' -56.9 NC_005336.1 + 87964 0.67 0.837966
Target:  5'- aCGGCGCCGAGc-GC-CUCGUcgucggacagcgcgGCGACg -3'
miRNA:   3'- gGCUGUGGCUCcaCGaGAGCG--------------UGCUG- -5'
25041 5' -56.9 NC_005336.1 + 94185 0.67 0.832246
Target:  5'- gUCGGCGCCGgugcGGG-GUUgUCGCcggACGACg -3'
miRNA:   3'- -GGCUGUGGC----UCCaCGAgAGCG---UGCUG- -5'
25041 5' -56.9 NC_005336.1 + 88202 0.67 0.832246
Target:  5'- uCCaGCGgCGaAGGcGCUCgcggCGCGCGGCg -3'
miRNA:   3'- -GGcUGUgGC-UCCaCGAGa---GCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 133818 0.67 0.832246
Target:  5'- gCGACGCUGcuggacGUGCUg-CGCGCGGCg -3'
miRNA:   3'- gGCUGUGGCuc----CACGAgaGCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 69456 0.67 0.823925
Target:  5'- gCGGCACCcGGGaUGCUgcCUCuucgagacgcuGCGCGACg -3'
miRNA:   3'- gGCUGUGGcUCC-ACGA--GAG-----------CGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 121814 0.67 0.823925
Target:  5'- gCGGCAUCG-GGcGCUUcgCGCugGGCu -3'
miRNA:   3'- gGCUGUGGCuCCaCGAGa-GCGugCUG- -5'
25041 5' -56.9 NC_005336.1 + 124909 0.67 0.823925
Target:  5'- aCUG-CGCCgGAGGcGCg--CGCGCGACg -3'
miRNA:   3'- -GGCuGUGG-CUCCaCGagaGCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 106015 0.67 0.823925
Target:  5'- aCGGCGCCGAGcgcGUGCUCaUCcuCACGcCg -3'
miRNA:   3'- gGCUGUGGCUC---CACGAG-AGc-GUGCuG- -5'
25041 5' -56.9 NC_005336.1 + 33236 0.67 0.823925
Target:  5'- uCgGGCACC-AGGUGCgCgaggCGCGCGuACa -3'
miRNA:   3'- -GgCUGUGGcUCCACGaGa---GCGUGC-UG- -5'
25041 5' -56.9 NC_005336.1 + 33160 0.67 0.815433
Target:  5'- cCCGGaGCCGAGcuccaugcgcGUGCUCU-GCACGGu -3'
miRNA:   3'- -GGCUgUGGCUC----------CACGAGAgCGUGCUg -5'
25041 5' -56.9 NC_005336.1 + 100901 0.67 0.815433
Target:  5'- gCGGCGCgGAGGcaGC-CUCGCACa-- -3'
miRNA:   3'- gGCUGUGgCUCCa-CGaGAGCGUGcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.