miRNA display CGI


Results 21 - 40 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 3' -57.1 NC_005336.1 + 71377 0.66 0.834283
Target:  5'- cUCGcUGGCGCccACGC-CCGACGCGg-- -3'
miRNA:   3'- -AGUaGCUGCG--UGCGuGGCUGCGCgau -5'
25042 3' -57.1 NC_005336.1 + 80610 0.66 0.842471
Target:  5'- -gAUCuGCGCgGCGCGCUuGCGCGCg- -3'
miRNA:   3'- agUAGcUGCG-UGCGUGGcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 44905 0.66 0.850469
Target:  5'- ----aGACGCAUaGCGCCuuacGGCGCGCg- -3'
miRNA:   3'- aguagCUGCGUG-CGUGG----CUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 19928 0.66 0.850469
Target:  5'- gCGcUGGCGCAgGCGgUGugGCGCg- -3'
miRNA:   3'- aGUaGCUGCGUgCGUgGCugCGCGau -5'
25042 3' -57.1 NC_005336.1 + 6825 0.66 0.82591
Target:  5'- cUCGUUcACGCGCGCGCCcGCGUccaGCa- -3'
miRNA:   3'- -AGUAGcUGCGUGCGUGGcUGCG---CGau -5'
25042 3' -57.1 NC_005336.1 + 134080 0.66 0.850469
Target:  5'- cCA-CG-CGgACGCAgCUGACGCGCUc -3'
miRNA:   3'- aGUaGCuGCgUGCGU-GGCUGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 21843 0.66 0.850469
Target:  5'- ---cUGaACGCGCGCgugGCCGACGaCGCg- -3'
miRNA:   3'- aguaGC-UGCGUGCG---UGGCUGC-GCGau -5'
25042 3' -57.1 NC_005336.1 + 121077 0.66 0.82591
Target:  5'- gCAUgGACGaGCGCgACCGGCGCcgGCa- -3'
miRNA:   3'- aGUAgCUGCgUGCG-UGGCUGCG--CGau -5'
25042 3' -57.1 NC_005336.1 + 90010 0.66 0.842471
Target:  5'- uUC-UCGGaGCGCGCGCuCGcgaugcucaGCGCGCUGu -3'
miRNA:   3'- -AGuAGCUgCGUGCGUG-GC---------UGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 17739 0.66 0.82591
Target:  5'- -aAUCGuGCGCGCGUccggcGCCcaGGCGCGCa- -3'
miRNA:   3'- agUAGC-UGCGUGCG-----UGG--CUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 97952 0.66 0.842471
Target:  5'- -gGUC-ACGCGCGCACUG-CGCGaCa- -3'
miRNA:   3'- agUAGcUGCGUGCGUGGCuGCGC-Gau -5'
25042 3' -57.1 NC_005336.1 + 40584 0.66 0.850469
Target:  5'- gCGUCuuGCGCAugagcCGCGCgGGCGCGCc- -3'
miRNA:   3'- aGUAGc-UGCGU-----GCGUGgCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 19379 0.66 0.850469
Target:  5'- gCGUUGAuguugUGCACGCugCG-CGCGUUc -3'
miRNA:   3'- aGUAGCU-----GCGUGCGugGCuGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 76383 0.66 0.850469
Target:  5'- cUCGUCGAUGacCACGCA--GACGCgGCUGc -3'
miRNA:   3'- -AGUAGCUGC--GUGCGUggCUGCG-CGAU- -5'
25042 3' -57.1 NC_005336.1 + 6611 0.66 0.842471
Target:  5'- cCA-CGGCGCGugcgucUGCGCCcGCGCGCa- -3'
miRNA:   3'- aGUaGCUGCGU------GCGUGGcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 10139 0.66 0.842471
Target:  5'- -aGUCGGCGCuCGCGgCGGUGUGCa- -3'
miRNA:   3'- agUAGCUGCGuGCGUgGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 42212 0.66 0.849678
Target:  5'- uUCGcgCGGCGguaccCGCGCACCGcggccgccguggaGCGCGCg- -3'
miRNA:   3'- -AGUa-GCUGC-----GUGCGUGGC-------------UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 31897 0.66 0.850469
Target:  5'- aCAUCGcCGCGCGCAuguCCaGCGUGUc- -3'
miRNA:   3'- aGUAGCuGCGUGCGU---GGcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 124414 0.66 0.850469
Target:  5'- cUCGUgGACGCGguguCGCGucucguguguCCGuGCGCGCUGc -3'
miRNA:   3'- -AGUAgCUGCGU----GCGU----------GGC-UGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 99504 0.66 0.82591
Target:  5'- -gGUCGGCGCGcCGCuggauagcggACCG-CGCGCc- -3'
miRNA:   3'- agUAGCUGCGU-GCG----------UGGCuGCGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.