miRNA display CGI


Results 1 - 20 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 3' -57.1 NC_005336.1 + 72245 0.66 0.834283
Target:  5'- aCGUgGACGUcgGCGaCAUCGugGUGCa- -3'
miRNA:   3'- aGUAgCUGCG--UGC-GUGGCugCGCGau -5'
25042 3' -57.1 NC_005336.1 + 136461 0.66 0.82591
Target:  5'- gCAcgCGAgcuucuccucCGCGCGCAagGGCGCGCUGc -3'
miRNA:   3'- aGUa-GCU----------GCGUGCGUggCUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 121077 0.66 0.82591
Target:  5'- gCAUgGACGaGCGCgACCGGCGCcgGCa- -3'
miRNA:   3'- aGUAgCUGCgUGCG-UGGCUGCG--CGau -5'
25042 3' -57.1 NC_005336.1 + 48076 0.66 0.82591
Target:  5'- cCGUCGGCGuCACaCACCugcggaugGACGCGCn- -3'
miRNA:   3'- aGUAGCUGC-GUGcGUGG--------CUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 24238 0.66 0.834283
Target:  5'- cUCAUCGccagucggauGCGCGUGCACU-ACGCGCg- -3'
miRNA:   3'- -AGUAGC----------UGCGUGCGUGGcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 61864 0.66 0.834283
Target:  5'- --cUCG-CGCACGacCGCgCGGCGCGCg- -3'
miRNA:   3'- aguAGCuGCGUGC--GUG-GCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 18472 0.66 0.82591
Target:  5'- cCGcCGGCGCGaGCAccuCCGugGCGCa- -3'
miRNA:   3'- aGUaGCUGCGUgCGU---GGCugCGCGau -5'
25042 3' -57.1 NC_005336.1 + 97952 0.66 0.842471
Target:  5'- -gGUC-ACGCGCGCACUG-CGCGaCa- -3'
miRNA:   3'- agUAGcUGCGUGCGUGGCuGCGC-Gau -5'
25042 3' -57.1 NC_005336.1 + 7183 0.66 0.834283
Target:  5'- cCA-CGAgCGCGCGgACCGugGCGa-- -3'
miRNA:   3'- aGUaGCU-GCGUGCgUGGCugCGCgau -5'
25042 3' -57.1 NC_005336.1 + 97301 0.66 0.842471
Target:  5'- ----aGugGCGCGCgGCCGugGCGgaGc -3'
miRNA:   3'- aguagCugCGUGCG-UGGCugCGCgaU- -5'
25042 3' -57.1 NC_005336.1 + 76966 0.66 0.833453
Target:  5'- gUCuUCGugGCGCgguggccgaaccaGCGCCGGCGCa--- -3'
miRNA:   3'- -AGuAGCugCGUG-------------CGUGGCUGCGcgau -5'
25042 3' -57.1 NC_005336.1 + 97059 0.66 0.82591
Target:  5'- cUCcgCG-CGCAUGCG-CGGCGUGCg- -3'
miRNA:   3'- -AGuaGCuGCGUGCGUgGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 68207 0.66 0.82591
Target:  5'- gCGUgGACGCuGCGCGCgGAggaggccuCGCGCg- -3'
miRNA:   3'- aGUAgCUGCG-UGCGUGgCU--------GCGCGau -5'
25042 3' -57.1 NC_005336.1 + 71377 0.66 0.834283
Target:  5'- cUCGcUGGCGCccACGC-CCGACGCGg-- -3'
miRNA:   3'- -AGUaGCUGCG--UGCGuGGCUGCGCgau -5'
25042 3' -57.1 NC_005336.1 + 99504 0.66 0.82591
Target:  5'- -gGUCGGCGCGcCGCuggauagcggACCG-CGCGCc- -3'
miRNA:   3'- agUAGCUGCGU-GCG----------UGGCuGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 38455 0.66 0.82591
Target:  5'- -gAUCGGcCGC-CGCcCCGugGUGCUc -3'
miRNA:   3'- agUAGCU-GCGuGCGuGGCugCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 75350 0.66 0.841661
Target:  5'- gUCAucUCGugGCuguucagGCGCACCG-CGCGg-- -3'
miRNA:   3'- -AGU--AGCugCG-------UGCGUGGCuGCGCgau -5'
25042 3' -57.1 NC_005336.1 + 6825 0.66 0.82591
Target:  5'- cUCGUUcACGCGCGCGCCcGCGUccaGCa- -3'
miRNA:   3'- -AGUAGcUGCGUGCGUGGcUGCG---CGau -5'
25042 3' -57.1 NC_005336.1 + 17739 0.66 0.82591
Target:  5'- -aAUCGuGCGCGCGUccggcGCCcaGGCGCGCa- -3'
miRNA:   3'- agUAGC-UGCGUGCG-----UGG--CUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 6611 0.66 0.842471
Target:  5'- cCA-CGGCGCGugcgucUGCGCCcGCGCGCa- -3'
miRNA:   3'- aGUaGCUGCGU------GCGUGGcUGCGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.