miRNA display CGI


Results 1 - 20 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 3' -57.1 NC_005336.1 + 56768 0.74 0.39365
Target:  5'- --uUCGuGCGCAUGCACCGGCaGCGCc- -3'
miRNA:   3'- aguAGC-UGCGUGCGUGGCUG-CGCGau -5'
25042 3' -57.1 NC_005336.1 + 50748 0.76 0.337555
Target:  5'- uUCAaCGugGUgccGCGCACCauGACGCGCUAc -3'
miRNA:   3'- -AGUaGCugCG---UGCGUGG--CUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 68369 0.76 0.337555
Target:  5'- --uUCGACGCGCggGCGCCGGCggccGCGCUGu -3'
miRNA:   3'- aguAGCUGCGUG--CGUGGCUG----CGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 49947 0.75 0.345202
Target:  5'- -gGUCGGCGCAgCGCAUCuGCGCGCa- -3'
miRNA:   3'- agUAGCUGCGU-GCGUGGcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 60897 0.75 0.345202
Target:  5'- cCGUCGGCcuaGCGCGCGgCGGCGUGCg- -3'
miRNA:   3'- aGUAGCUG---CGUGCGUgGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 14888 0.75 0.352972
Target:  5'- gUCGUCGcGCGCGCGCcuCCGGCGCaGUUGg -3'
miRNA:   3'- -AGUAGC-UGCGUGCGu-GGCUGCG-CGAU- -5'
25042 3' -57.1 NC_005336.1 + 66671 0.75 0.360866
Target:  5'- ---cCGACGCACGCGCgGGC-CGCUGg -3'
miRNA:   3'- aguaGCUGCGUGCGUGgCUGcGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 128031 0.74 0.385274
Target:  5'- gCGUgaUGGCGCugGCGCugcgCGGCGCGCUAg -3'
miRNA:   3'- aGUA--GCUGCGugCGUG----GCUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 123650 0.74 0.38861
Target:  5'- uUCAUCGACGCggGCGUgagcauggccacgucGCgCGACGCGCg- -3'
miRNA:   3'- -AGUAGCUGCG--UGCG---------------UG-GCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 130603 0.76 0.333027
Target:  5'- cCAUCGcucgcgacugguggaGCGCGCGCugCG-CGCGCUGc -3'
miRNA:   3'- aGUAGC---------------UGCGUGCGugGCuGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 88482 0.76 0.31536
Target:  5'- gCGUgGACGCgacGCGCGCgGGCGCGCg- -3'
miRNA:   3'- aGUAgCUGCG---UGCGUGgCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 70143 0.77 0.280855
Target:  5'- gUCAUCGAcuaCGCgACGCGCUG-CGCGCUGu -3'
miRNA:   3'- -AGUAGCU---GCG-UGCGUGGCuGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 129394 0.8 0.195283
Target:  5'- cCGUCGuGCGCGCGCugcuggacGCCGGCGCGCg- -3'
miRNA:   3'- aGUAGC-UGCGUGCG--------UGGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 131950 0.79 0.200197
Target:  5'- uUUGUUGugGCGCGCGCCGGCgcauccGCGCUAc -3'
miRNA:   3'- -AGUAGCugCGUGCGUGGCUG------CGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 15030 0.78 0.226405
Target:  5'- gCGUCGGCGCGCGCcCCGGgcgcCGCGCg- -3'
miRNA:   3'- aGUAGCUGCGUGCGuGGCU----GCGCGau -5'
25042 3' -57.1 NC_005336.1 + 44261 0.78 0.249415
Target:  5'- ----aGGCGCGCGCGCgCGGCGCGCg- -3'
miRNA:   3'- aguagCUGCGUGCGUG-GCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 39991 0.78 0.249415
Target:  5'- gUCGUCGGCG-ACGC-CgCGACGCGCUAc -3'
miRNA:   3'- -AGUAGCUGCgUGCGuG-GCUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 45827 0.78 0.249415
Target:  5'- -aGUCGGUGCACGCGuCCGGCGCGCc- -3'
miRNA:   3'- agUAGCUGCGUGCGU-GGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 128137 0.78 0.255462
Target:  5'- ---gCGGCGCACGCGCCugGGCGCGCc- -3'
miRNA:   3'- aguaGCUGCGUGCGUGG--CUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 98617 0.77 0.274324
Target:  5'- -gAUCcGCGCGCGCGCCGcaGCGCGCg- -3'
miRNA:   3'- agUAGcUGCGUGCGUGGC--UGCGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.