miRNA display CGI


Results 1 - 20 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 3' -57.1 NC_005336.1 + 129250 1.07 0.002683
Target:  5'- uUCAUCGACGCACGCACCGACGCGCUAg -3'
miRNA:   3'- -AGUAGCUGCGUGCGUGGCUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 12577 0.86 0.074726
Target:  5'- gUCGcUGACGCGCGCGCCGugGCGCa- -3'
miRNA:   3'- -AGUaGCUGCGUGCGUGGCugCGCGau -5'
25042 3' -57.1 NC_005336.1 + 95532 0.84 0.100081
Target:  5'- gUCcgUGACGCGCGCGCCGcGCGCGCg- -3'
miRNA:   3'- -AGuaGCUGCGUGCGUGGC-UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 22115 0.82 0.136889
Target:  5'- uUCGUCGACGgACGCACCuucaccucgGACGCGCg- -3'
miRNA:   3'- -AGUAGCUGCgUGCGUGG---------CUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 101567 0.81 0.147871
Target:  5'- cUCggCGACGCGCGCGCCGggcgcgGCGCGCa- -3'
miRNA:   3'- -AGuaGCUGCGUGCGUGGC------UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 129394 0.8 0.195283
Target:  5'- cCGUCGuGCGCGCGCugcuggacGCCGGCGCGCg- -3'
miRNA:   3'- aGUAGC-UGCGUGCG--------UGGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 131950 0.79 0.200197
Target:  5'- uUUGUUGugGCGCGCGCCGGCgcauccGCGCUAc -3'
miRNA:   3'- -AGUAGCugCGUGCGUGGCUG------CGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 15030 0.78 0.226405
Target:  5'- gCGUCGGCGCGCGCcCCGGgcgcCGCGCg- -3'
miRNA:   3'- aGUAGCUGCGUGCGuGGCU----GCGCGau -5'
25042 3' -57.1 NC_005336.1 + 53538 0.78 0.231983
Target:  5'- --cUCcGCGCGCGCGCCGGCGCuGCUGc -3'
miRNA:   3'- aguAGcUGCGUGCGUGGCUGCG-CGAU- -5'
25042 3' -57.1 NC_005336.1 + 120474 0.78 0.231983
Target:  5'- aUCGUCGAgGCGCGCcCCGAgauggccucCGCGCUGu -3'
miRNA:   3'- -AGUAGCUgCGUGCGuGGCU---------GCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 97849 0.78 0.237677
Target:  5'- gCG-CGugGCgacaGCGCACCGACGCGCa- -3'
miRNA:   3'- aGUaGCugCG----UGCGUGGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 45827 0.78 0.249415
Target:  5'- -aGUCGGUGCACGCGuCCGGCGCGCc- -3'
miRNA:   3'- agUAGCUGCGUGCGU-GGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 39991 0.78 0.249415
Target:  5'- gUCGUCGGCG-ACGC-CgCGACGCGCUAc -3'
miRNA:   3'- -AGUAGCUGCgUGCGuG-GCUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 44261 0.78 0.249415
Target:  5'- ----aGGCGCGCGCGCgCGGCGCGCg- -3'
miRNA:   3'- aguagCUGCGUGCGUG-GCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 128137 0.78 0.255462
Target:  5'- ---gCGGCGCACGCGCCugGGCGCGCc- -3'
miRNA:   3'- aguaGCUGCGUGCGUGG--CUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 98617 0.77 0.274324
Target:  5'- -gAUCcGCGCGCGCGCCGcaGCGCGCg- -3'
miRNA:   3'- agUAGcUGCGUGCGUGGC--UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 106419 0.77 0.274324
Target:  5'- cUCAagGACGCGgagaGCGCCGACGUGCUc -3'
miRNA:   3'- -AGUagCUGCGUg---CGUGGCUGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 133197 0.77 0.280855
Target:  5'- ----aGACGCACGCGCCGugGaCGCa- -3'
miRNA:   3'- aguagCUGCGUGCGUGGCugC-GCGau -5'
25042 3' -57.1 NC_005336.1 + 70143 0.77 0.280855
Target:  5'- gUCAUCGAcuaCGCgACGCGCUG-CGCGCUGu -3'
miRNA:   3'- -AGUAGCU---GCG-UGCGUGGCuGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 88482 0.76 0.31536
Target:  5'- gCGUgGACGCgacGCGCGCgGGCGCGCg- -3'
miRNA:   3'- aGUAgCUGCG---UGCGUGgCUGCGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.