miRNA display CGI


Results 1 - 20 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 3' -57.1 NC_005336.1 + 3310 0.67 0.817362
Target:  5'- gUCG-CGACGUgcagcagcaGCGCGCCcuuGCGCGCg- -3'
miRNA:   3'- -AGUaGCUGCG---------UGCGUGGc--UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 3310 0.67 0.817362
Target:  5'- gUCG-CGACGUgcagcagcaGCGCGCCcuuGCGCGCg- -3'
miRNA:   3'- -AGUaGCUGCG---------UGCGUGGc--UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 3512 0.67 0.769452
Target:  5'- gCAgcggCGGCGCcgcggggcggaagaGCGCGCCGA-GCGCg- -3'
miRNA:   3'- aGUa---GCUGCG--------------UGCGUGGCUgCGCGau -5'
25042 3' -57.1 NC_005336.1 + 3512 0.67 0.769452
Target:  5'- gCAgcggCGGCGCcgcggggcggaagaGCGCGCCGA-GCGCg- -3'
miRNA:   3'- aGUa---GCUGCG--------------UGCGUGGCUgCGCGau -5'
25042 3' -57.1 NC_005336.1 + 3734 0.7 0.62282
Target:  5'- gCG-CGGCGgGCGCggugagggaaGCCGGCGCGCg- -3'
miRNA:   3'- aGUaGCUGCgUGCG----------UGGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 3734 0.7 0.62282
Target:  5'- gCG-CGGCGgGCGCggugagggaaGCCGGCGCGCg- -3'
miRNA:   3'- aGUaGCUGCgUGCG----------UGGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 3940 0.72 0.502635
Target:  5'- gCcgCGGCGCA-GCGCCG-CGCGCa- -3'
miRNA:   3'- aGuaGCUGCGUgCGUGGCuGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 5405 0.67 0.790742
Target:  5'- cUCcgCGAUGC-CGUGCCGGCuCGCg- -3'
miRNA:   3'- -AGuaGCUGCGuGCGUGGCUGcGCGau -5'
25042 3' -57.1 NC_005336.1 + 5442 0.67 0.781572
Target:  5'- gUCAgcgCGGuCGcCACGCGCgCGAgCGCGCa- -3'
miRNA:   3'- -AGUa--GCU-GC-GUGCGUG-GCU-GCGCGau -5'
25042 3' -57.1 NC_005336.1 + 5776 0.69 0.704153
Target:  5'- gCAggCGGC-CGCGCACCGcacccACGCGCa- -3'
miRNA:   3'- aGUa-GCUGcGUGCGUGGC-----UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 6006 0.74 0.402142
Target:  5'- gUCcgUGugGCAgCGCACCG-CGCGCa- -3'
miRNA:   3'- -AGuaGCugCGU-GCGUGGCuGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 6245 0.67 0.772267
Target:  5'- cCGUCGcACGCACguuGUugCGGCGCaGCa- -3'
miRNA:   3'- aGUAGC-UGCGUG---CGugGCUGCG-CGau -5'
25042 3' -57.1 NC_005336.1 + 6520 0.71 0.592212
Target:  5'- -gGUCGAa-CACGUACCGcGCGCGCUu -3'
miRNA:   3'- agUAGCUgcGUGCGUGGC-UGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 6611 0.66 0.842471
Target:  5'- cCA-CGGCGCGugcgucUGCGCCcGCGCGCa- -3'
miRNA:   3'- aGUaGCUGCGU------GCGUGGcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 6825 0.66 0.82591
Target:  5'- cUCGUUcACGCGCGCGCCcGCGUccaGCa- -3'
miRNA:   3'- -AGUAGcUGCGUGCGUGGcUGCG---CGau -5'
25042 3' -57.1 NC_005336.1 + 7183 0.66 0.834283
Target:  5'- cCA-CGAgCGCGCGgACCGugGCGa-- -3'
miRNA:   3'- aGUaGCU-GCGUGCgUGGCugCGCgau -5'
25042 3' -57.1 NC_005336.1 + 7365 0.67 0.781572
Target:  5'- gCGUgCGAgGuCGCcCGCCGGCGCGCg- -3'
miRNA:   3'- aGUA-GCUgC-GUGcGUGGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 7838 0.7 0.62282
Target:  5'- cCGguagCG-CGgAUGCGCCGGCGCGCg- -3'
miRNA:   3'- aGUa---GCuGCgUGCGUGGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 7895 0.69 0.704153
Target:  5'- cCAcCGACGCagugaucaucuGCGCGCCGACgucauuguaGCGCUc -3'
miRNA:   3'- aGUaGCUGCG-----------UGCGUGGCUG---------CGCGAu -5'
25042 3' -57.1 NC_005336.1 + 8012 0.69 0.694107
Target:  5'- -gAUCGGCGUGCGU-CCGGCG-GCUGa -3'
miRNA:   3'- agUAGCUGCGUGCGuGGCUGCgCGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.