miRNA display CGI


Results 21 - 40 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 3' -57.1 NC_005336.1 + 8281 0.7 0.653491
Target:  5'- gCAU-GACGCucGCGCGCgGGCGCGUg- -3'
miRNA:   3'- aGUAgCUGCG--UGCGUGgCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 8459 0.69 0.684008
Target:  5'- -gGUC-ACGCugGCGCCGcgccgaagcaGCGCGCg- -3'
miRNA:   3'- agUAGcUGCGugCGUGGC----------UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 9175 0.71 0.582057
Target:  5'- -aGUCGcgcaGCGCGCGCAgCG-CGCGCUc -3'
miRNA:   3'- agUAGC----UGCGUGCGUgGCuGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 9228 0.68 0.724056
Target:  5'- gCcgCGAUGCGUGCACggagCGGCGCGCg- -3'
miRNA:   3'- aGuaGCUGCGUGCGUG----GCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 9452 0.67 0.781572
Target:  5'- cUCGcUCGGCGCGCGCGCCaccACGUacGCc- -3'
miRNA:   3'- -AGU-AGCUGCGUGCGUGGc--UGCG--CGau -5'
25042 3' -57.1 NC_005336.1 + 10030 0.67 0.789831
Target:  5'- uUCGUCGcgauggaguucagGCGCACgGUGCCGuCGCuGCUGa -3'
miRNA:   3'- -AGUAGC-------------UGCGUG-CGUGGCuGCG-CGAU- -5'
25042 3' -57.1 NC_005336.1 + 10139 0.66 0.842471
Target:  5'- -aGUCGGCGCuCGCGgCGGUGUGCa- -3'
miRNA:   3'- agUAGCUGCGuGCGUgGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 10389 0.73 0.437246
Target:  5'- -gGUCcACGCGCGCGCCGgcguccagcaGCGCGCg- -3'
miRNA:   3'- agUAGcUGCGUGCGUGGC----------UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 10618 0.7 0.653491
Target:  5'- gCggCGGCGCGCGCGCCcucCGCGUc- -3'
miRNA:   3'- aGuaGCUGCGUGCGUGGcu-GCGCGau -5'
25042 3' -57.1 NC_005336.1 + 11098 0.67 0.812152
Target:  5'- gUCGUCGAggcUGCGCGCGgCCGAgaccgacagcgggucCGCGUUc -3'
miRNA:   3'- -AGUAGCU---GCGUGCGU-GGCU---------------GCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 11527 0.72 0.493019
Target:  5'- aCuugCGGCGCACGCGCuCcACGCGCg- -3'
miRNA:   3'- aGua-GCUGCGUGCGUG-GcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 11655 0.75 0.368881
Target:  5'- gUCGUCGGCgGCGCGC-CCaGGCGCGUg- -3'
miRNA:   3'- -AGUAGCUG-CGUGCGuGG-CUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 11795 0.69 0.663692
Target:  5'- cUCGcgCGugGC-CGCGCuCGGCGUGCg- -3'
miRNA:   3'- -AGUa-GCugCGuGCGUG-GCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 11856 0.67 0.820802
Target:  5'- gCGUcCGGCGCcaagggcagcgcuguGCGCA-CGGCGCGCg- -3'
miRNA:   3'- aGUA-GCUGCG---------------UGCGUgGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 12418 0.67 0.799769
Target:  5'- cUUGUCGGCGCGCG-GCC-ACGCGUc- -3'
miRNA:   3'- -AGUAGCUGCGUGCgUGGcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 12577 0.86 0.074726
Target:  5'- gUCGcUGACGCGCGCGCCGugGCGCa- -3'
miRNA:   3'- -AGUaGCUGCGUGCGUGGCugCGCGau -5'
25042 3' -57.1 NC_005336.1 + 13091 0.69 0.673867
Target:  5'- gCAggCGGCGcCGCGUGCCGugcACGCGCg- -3'
miRNA:   3'- aGUa-GCUGC-GUGCGUGGC---UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 14888 0.75 0.352972
Target:  5'- gUCGUCGcGCGCGCGCcuCCGGCGCaGUUGg -3'
miRNA:   3'- -AGUAGC-UGCGUGCGu-GGCUGCG-CGAU- -5'
25042 3' -57.1 NC_005336.1 + 14936 0.66 0.858269
Target:  5'- gCGcCGGCGCACGUGCuCGcCGUGCc- -3'
miRNA:   3'- aGUaGCUGCGUGCGUG-GCuGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 15030 0.78 0.226405
Target:  5'- gCGUCGGCGCGCGCcCCGGgcgcCGCGCg- -3'
miRNA:   3'- aGUAGCUGCGUGCGuGGCU----GCGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.