miRNA display CGI


Results 21 - 40 of 363 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 5' -62.7 NC_005336.1 + 5473 0.71 0.343838
Target:  5'- aGUUCGCGgCCGCGugGCcGCuGUUCa -3'
miRNA:   3'- -CGGGCGCgGGCGCugCGuCGcCAAGc -5'
25042 5' -62.7 NC_005336.1 + 5730 0.88 0.025131
Target:  5'- -gCUGCGUCCGCGugGCAGCGGUUCa -3'
miRNA:   3'- cgGGCGCGGGCGCugCGUCGCCAAGc -5'
25042 5' -62.7 NC_005336.1 + 5826 0.68 0.483608
Target:  5'- gGCgCCGCGCgCGCGGC-CAGcCGGcgCa -3'
miRNA:   3'- -CG-GGCGCGgGCGCUGcGUC-GCCaaGc -5'
25042 5' -62.7 NC_005336.1 + 5884 0.67 0.56774
Target:  5'- aGCCCgGCGCCgcgggCGUGGgcucaggauagUGCGGCGGcgUCGg -3'
miRNA:   3'- -CGGG-CGCGG-----GCGCU-----------GCGUCGCCa-AGC- -5'
25042 5' -62.7 NC_005336.1 + 5998 0.7 0.366302
Target:  5'- aGCgUCGCGUCCGUGugGCAGCGcaccgCGc -3'
miRNA:   3'- -CG-GGCGCGGGCGCugCGUCGCcaa--GC- -5'
25042 5' -62.7 NC_005336.1 + 6085 0.67 0.57736
Target:  5'- aGCCCGgGUccuCCGCGGCGauguGCGGguacgCGc -3'
miRNA:   3'- -CGGGCgCG---GGCGCUGCgu--CGCCaa---GC- -5'
25042 5' -62.7 NC_005336.1 + 6101 0.66 0.635607
Target:  5'- gGCgCGCGCCCucGCcGCGCAGCGc---- -3'
miRNA:   3'- -CGgGCGCGGG--CGcUGCGUCGCcaagc -5'
25042 5' -62.7 NC_005336.1 + 6172 0.68 0.492684
Target:  5'- cGCggaCGCuGCCCGCGAUcuuGCGGUUCu -3'
miRNA:   3'- -CGg--GCG-CGGGCGCUGcguCGCCAAGc -5'
25042 5' -62.7 NC_005336.1 + 6418 0.68 0.500919
Target:  5'- aGCCCGCGCUCGagcacgaauuccaCGACGCcGCGaGcgCa -3'
miRNA:   3'- -CGGGCGCGGGC-------------GCUGCGuCGC-CaaGc -5'
25042 5' -62.7 NC_005336.1 + 6623 0.74 0.219731
Target:  5'- cGUCUGCGCCCGCG-CGCAGCa----- -3'
miRNA:   3'- -CGGGCGCGGGCGCuGCGUCGccaagc -5'
25042 5' -62.7 NC_005336.1 + 6833 0.7 0.39779
Target:  5'- cGCgCGCGCCCGCGuccagcaGCAGCcGcgCGa -3'
miRNA:   3'- -CGgGCGCGGGCGCug-----CGUCGcCaaGC- -5'
25042 5' -62.7 NC_005336.1 + 7050 0.69 0.465702
Target:  5'- aCCCGCG-CCGCGACau-GCGGUUg- -3'
miRNA:   3'- cGGGCGCgGGCGCUGcguCGCCAAgc -5'
25042 5' -62.7 NC_005336.1 + 7101 0.7 0.387367
Target:  5'- uGCUCGUGCCgCGCGAagugcacgcagaggUGCAGCGGcgugCGc -3'
miRNA:   3'- -CGGGCGCGG-GCGCU--------------GCGUCGCCaa--GC- -5'
25042 5' -62.7 NC_005336.1 + 7967 0.68 0.483608
Target:  5'- --aCGCGCCgGCGAcCGCcAGUGGUUgCGu -3'
miRNA:   3'- cggGCGCGGgCGCU-GCG-UCGCCAA-GC- -5'
25042 5' -62.7 NC_005336.1 + 8687 0.66 0.625867
Target:  5'- gGCCC-CGUCgCGCGGCcuccGCAGCGGc--- -3'
miRNA:   3'- -CGGGcGCGG-GCGCUG----CGUCGCCaagc -5'
25042 5' -62.7 NC_005336.1 + 8903 0.68 0.520363
Target:  5'- gGCCgCGCGCUCGCGcACccagaAGCGG-UCGu -3'
miRNA:   3'- -CGG-GCGCGGGCGC-UGcg---UCGCCaAGC- -5'
25042 5' -62.7 NC_005336.1 + 9285 0.68 0.501838
Target:  5'- cGCCgCGCGCggCGCGAgagcaggcucCGCGGCGGgcgCGc -3'
miRNA:   3'- -CGG-GCGCGg-GCGCU----------GCGUCGCCaa-GC- -5'
25042 5' -62.7 NC_005336.1 + 9420 0.66 0.587014
Target:  5'- gGCUCGCGaCCuCG-CGCAGCGGguacgccagUCGg -3'
miRNA:   3'- -CGGGCGCgGGcGCuGCGUCGCCa--------AGC- -5'
25042 5' -62.7 NC_005336.1 + 9480 0.67 0.57736
Target:  5'- gGCUCGCGCCCGUcuccucgaggaaGAgCGCAGCc--UCGa -3'
miRNA:   3'- -CGGGCGCGGGCG------------CU-GCGUCGccaAGC- -5'
25042 5' -62.7 NC_005336.1 + 9524 0.68 0.505521
Target:  5'- cGCUCGCagcgacucugccacaGCCCGCGGCucggGCuGCGuGUUCa -3'
miRNA:   3'- -CGGGCG---------------CGGGCGCUG----CGuCGC-CAAGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.