miRNA display CGI


Results 1 - 20 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 5' -62.7 NC_005336.1 + 469 0.66 0.635607
Target:  5'- gGCCgCGCGUCCGCGACGgccccgcuaaAGC-GUUUa -3'
miRNA:   3'- -CGG-GCGCGGGCGCUGCg---------UCGcCAAGc -5'
25042 5' -62.7 NC_005336.1 + 469 0.66 0.635607
Target:  5'- gGCCgCGCGUCCGCGACGgccccgcuaaAGC-GUUUa -3'
miRNA:   3'- -CGG-GCGCGGGCGCUGCg---------UCGcCAAGc -5'
25042 5' -62.7 NC_005336.1 + 1032 0.69 0.448146
Target:  5'- cCCCGCGgUCGCGG-GCGGCGGccCGu -3'
miRNA:   3'- cGGGCGCgGGCGCUgCGUCGCCaaGC- -5'
25042 5' -62.7 NC_005336.1 + 1032 0.69 0.448146
Target:  5'- cCCCGCGgUCGCGG-GCGGCGGccCGu -3'
miRNA:   3'- cGGGCGCgGGCGCUgCGUCGCCaaGC- -5'
25042 5' -62.7 NC_005336.1 + 1609 0.66 0.596698
Target:  5'- aCCUGCGUCCgaGCGA-GCgAGCGaGUUCGc -3'
miRNA:   3'- cGGGCGCGGG--CGCUgCG-UCGC-CAAGC- -5'
25042 5' -62.7 NC_005336.1 + 1609 0.66 0.596698
Target:  5'- aCCUGCGUCCgaGCGA-GCgAGCGaGUUCGc -3'
miRNA:   3'- cGGGCGCGGG--CGCUgCG-UCGC-CAAGC- -5'
25042 5' -62.7 NC_005336.1 + 3488 0.7 0.39779
Target:  5'- gGCCCGCcUCCGCGAaggcggccgGCAGCGGcggCGc -3'
miRNA:   3'- -CGGGCGcGGGCGCUg--------CGUCGCCaa-GC- -5'
25042 5' -62.7 NC_005336.1 + 3488 0.7 0.39779
Target:  5'- gGCCCGCcUCCGCGAaggcggccgGCAGCGGcggCGc -3'
miRNA:   3'- -CGGGCGcGGGCGCUg--------CGUCGCCaa-GC- -5'
25042 5' -62.7 NC_005336.1 + 3651 0.67 0.54863
Target:  5'- gGUCUGCGCgCCGCGGCGggagggAGgGGUcUCGa -3'
miRNA:   3'- -CGGGCGCG-GGCGCUGCg-----UCgCCA-AGC- -5'
25042 5' -62.7 NC_005336.1 + 3651 0.67 0.54863
Target:  5'- gGUCUGCGCgCCGCGGCGggagggAGgGGUcUCGa -3'
miRNA:   3'- -CGGGCGCG-GGCGCUGCg-----UCgCCA-AGC- -5'
25042 5' -62.7 NC_005336.1 + 3714 0.78 0.12624
Target:  5'- gGCCgggagagGCGCCCGgGGCGCGGCGGgcgCGg -3'
miRNA:   3'- -CGGg------CGCGGGCgCUGCGUCGCCaa-GC- -5'
25042 5' -62.7 NC_005336.1 + 3714 0.78 0.12624
Target:  5'- gGCCgggagagGCGCCCGgGGCGCGGCGGgcgCGg -3'
miRNA:   3'- -CGGg------CGCGGGCgCUGCGUCGCCaa-GC- -5'
25042 5' -62.7 NC_005336.1 + 3781 0.7 0.39779
Target:  5'- cGCCgCGCgGCCCGCGGcCGCcAGCGccgCGg -3'
miRNA:   3'- -CGG-GCG-CGGGCGCU-GCG-UCGCcaaGC- -5'
25042 5' -62.7 NC_005336.1 + 3781 0.7 0.39779
Target:  5'- cGCCgCGCgGCCCGCGGcCGCcAGCGccgCGg -3'
miRNA:   3'- -CGG-GCG-CGGGCGCU-GCG-UCGCcaaGC- -5'
25042 5' -62.7 NC_005336.1 + 3825 0.7 0.389756
Target:  5'- cGCgCGCGCCCGCcgcGCGCAGCaGcgCc -3'
miRNA:   3'- -CGgGCGCGGGCGc--UGCGUCGcCaaGc -5'
25042 5' -62.7 NC_005336.1 + 3825 0.7 0.389756
Target:  5'- cGCgCGCGCCCGCcgcGCGCAGCaGcgCc -3'
miRNA:   3'- -CGgGCGCGGGCGc--UGCGUCGcCaaGc -5'
25042 5' -62.7 NC_005336.1 + 3894 0.69 0.465702
Target:  5'- cCCCGCGCCgCGCcagcaGCAGCGGc--- -3'
miRNA:   3'- cGGGCGCGG-GCGcug--CGUCGCCaagc -5'
25042 5' -62.7 NC_005336.1 + 3894 0.68 0.474612
Target:  5'- cCCCGCGCCgCGCcaGCaGCAGCGGc--- -3'
miRNA:   3'- cGGGCGCGG-GCGc-UG-CGUCGCCaagc -5'
25042 5' -62.7 NC_005336.1 + 3920 0.72 0.308644
Target:  5'- aGCCgCGCGUccagcgggccgCCGCGGCGCAGCGccgCGc -3'
miRNA:   3'- -CGG-GCGCG-----------GGCGCUGCGUCGCcaaGC- -5'
25042 5' -62.7 NC_005336.1 + 3998 0.69 0.439507
Target:  5'- gGCCCGcCGCCCGCGcGCcugccgccaGCAGCGcGcgCa -3'
miRNA:   3'- -CGGGC-GCGGGCGC-UG---------CGUCGC-CaaGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.