miRNA display CGI


Results 1 - 20 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 5' -62.7 NC_005336.1 + 124685 0.73 0.276266
Target:  5'- -gCUGCgGCCCGCGGCGuCGGCGGgcgcCGa -3'
miRNA:   3'- cgGGCG-CGGGCGCUGC-GUCGCCaa--GC- -5'
25042 5' -62.7 NC_005336.1 + 36293 0.74 0.224908
Target:  5'- cGUgCGCGCCCgGCGGCgGC-GCGGUUCc -3'
miRNA:   3'- -CGgGCGCGGG-CGCUG-CGuCGCCAAGc -5'
25042 5' -62.7 NC_005336.1 + 133917 0.74 0.230189
Target:  5'- aGCCCaCGCCCGCGGCGCcG-GGcUCGc -3'
miRNA:   3'- -CGGGcGCGGGCGCUGCGuCgCCaAGC- -5'
25042 5' -62.7 NC_005336.1 + 128105 0.74 0.230189
Target:  5'- aUCCGCGCCUGCGAgGCGGaGGUcgCGc -3'
miRNA:   3'- cGGGCGCGGGCGCUgCGUCgCCAa-GC- -5'
25042 5' -62.7 NC_005336.1 + 46396 0.73 0.24666
Target:  5'- cGCgCGCGCCCGCG-CGgGGCGccuGUUUGg -3'
miRNA:   3'- -CGgGCGCGGGCGCuGCgUCGC---CAAGC- -5'
25042 5' -62.7 NC_005336.1 + 138775 0.73 0.258175
Target:  5'- cGCCCGCGaCCGCGGgG-AGCGGagCGg -3'
miRNA:   3'- -CGGGCGCgGGCGCUgCgUCGCCaaGC- -5'
25042 5' -62.7 NC_005336.1 + 90017 0.73 0.264096
Target:  5'- aGCgCGCGCUCGCGAUGCucAGCGcgcuGUUCa -3'
miRNA:   3'- -CGgGCGCGGGCGCUGCG--UCGC----CAAGc -5'
25042 5' -62.7 NC_005336.1 + 123758 0.73 0.264096
Target:  5'- uGCUCGcCGCCggcUGCGACGCGGCGGc--- -3'
miRNA:   3'- -CGGGC-GCGG---GCGCUGCGUCGCCaagc -5'
25042 5' -62.7 NC_005336.1 + 76186 0.73 0.270126
Target:  5'- uGCCCGaccaCGCCgG-GGCGCAGCaGGUUCa -3'
miRNA:   3'- -CGGGC----GCGGgCgCUGCGUCG-CCAAGc -5'
25042 5' -62.7 NC_005336.1 + 13397 0.74 0.224908
Target:  5'- uGCUCGCGCCCGCcg-GCGGCGGg--- -3'
miRNA:   3'- -CGGGCGCGGGCGcugCGUCGCCaagc -5'
25042 5' -62.7 NC_005336.1 + 6623 0.74 0.219731
Target:  5'- cGUCUGCGCCCGCG-CGCAGCa----- -3'
miRNA:   3'- -CGGGCGCGGGCGCuGCGUCGccaagc -5'
25042 5' -62.7 NC_005336.1 + 42354 0.74 0.214154
Target:  5'- cGCgCGCGCUcucggccuccaugCGCGGCGUGGCGGUggUCGa -3'
miRNA:   3'- -CGgGCGCGG-------------GCGCUGCGUCGCCA--AGC- -5'
25042 5' -62.7 NC_005336.1 + 134008 0.81 0.074472
Target:  5'- cGCCUGCGCCgugCGCGugGguGCGGUgcgCGg -3'
miRNA:   3'- -CGGGCGCGG---GCGCugCguCGCCAa--GC- -5'
25042 5' -62.7 NC_005336.1 + 29019 0.79 0.098376
Target:  5'- aCCCGCaGCCCgGCGGCaGCGGCGGcUUCGa -3'
miRNA:   3'- cGGGCG-CGGG-CGCUG-CGUCGCC-AAGC- -5'
25042 5' -62.7 NC_005336.1 + 68415 0.79 0.100877
Target:  5'- cGCCCGCGCUCGCGccccCGCuGCGGgcgCGg -3'
miRNA:   3'- -CGGGCGCGGGCGCu---GCGuCGCCaa-GC- -5'
25042 5' -62.7 NC_005336.1 + 71328 0.78 0.120137
Target:  5'- uCCUGCGCCUGCucgUGCAGUGGUUCGg -3'
miRNA:   3'- cGGGCGCGGGCGcu-GCGUCGCCAAGC- -5'
25042 5' -62.7 NC_005336.1 + 3714 0.78 0.12624
Target:  5'- gGCCgggagagGCGCCCGgGGCGCGGCGGgcgCGg -3'
miRNA:   3'- -CGGg------CGCGGGCgCUGCGUCGCCaa-GC- -5'
25042 5' -62.7 NC_005336.1 + 98178 0.75 0.190769
Target:  5'- -aCCGUGUCUGCGuuuGCGCAGCGGcUCGu -3'
miRNA:   3'- cgGGCGCGGGCGC---UGCGUCGCCaAGC- -5'
25042 5' -62.7 NC_005336.1 + 19760 0.75 0.204807
Target:  5'- cGCUCGgugcCGCCCGCGGCGaCGGCGGcgCc -3'
miRNA:   3'- -CGGGC----GCGGGCGCUGC-GUCGCCaaGc -5'
25042 5' -62.7 NC_005336.1 + 50506 0.75 0.204807
Target:  5'- gGCgCCGCGCCCGCGGCGgaaGGCcugUCGg -3'
miRNA:   3'- -CG-GGCGCGGGCGCUGCg--UCGccaAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.