miRNA display CGI


Results 1 - 20 of 363 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 5' -62.7 NC_005336.1 + 98729 0.66 0.603491
Target:  5'- gGCCCccagcGCGUacgacaccaccacgUCGcCGACGCAGCGGUa-- -3'
miRNA:   3'- -CGGG-----CGCG--------------GGC-GCUGCGUCGCCAagc -5'
25042 5' -62.7 NC_005336.1 + 51991 0.66 0.596698
Target:  5'- aCCUGCGCgaGCuGGCGCAGCucUUCGa -3'
miRNA:   3'- cGGGCGCGggCG-CUGCGUCGccAAGC- -5'
25042 5' -62.7 NC_005336.1 + 40038 0.66 0.606406
Target:  5'- cGUgCGgGCagcgCGCGAUGCAGCGGa--- -3'
miRNA:   3'- -CGgGCgCGg---GCGCUGCGUCGCCaagc -5'
25042 5' -62.7 NC_005336.1 + 23359 0.66 0.596698
Target:  5'- aGCUCGCGCgguacCUGCGGCGCA-CGGg--- -3'
miRNA:   3'- -CGGGCGCG-----GGCGCUGCGUcGCCaagc -5'
25042 5' -62.7 NC_005336.1 + 28806 0.66 0.606406
Target:  5'- uGCCgCGCGCCCGagaGcGCGCAGCu----- -3'
miRNA:   3'- -CGG-GCGCGGGCg--C-UGCGUCGccaagc -5'
25042 5' -62.7 NC_005336.1 + 1609 0.66 0.596698
Target:  5'- aCCUGCGUCCgaGCGA-GCgAGCGaGUUCGc -3'
miRNA:   3'- cGGGCGCGGG--CGCUgCG-UCGC-CAAGC- -5'
25042 5' -62.7 NC_005336.1 + 54173 0.66 0.606406
Target:  5'- cGUCCG-GCCCG-GGCGCGGuCGGcggCGc -3'
miRNA:   3'- -CGGGCgCGGGCgCUGCGUC-GCCaa-GC- -5'
25042 5' -62.7 NC_005336.1 + 88695 0.66 0.606406
Target:  5'- uGCUCgugGCGCCguacauccucauCGCGACGCucGCGGggCGc -3'
miRNA:   3'- -CGGG---CGCGG------------GCGCUGCGu-CGCCaaGC- -5'
25042 5' -62.7 NC_005336.1 + 122654 0.66 0.596698
Target:  5'- aGCaCCGUGCCCG--GC-CAGCGG-UCGa -3'
miRNA:   3'- -CG-GGCGCGGGCgcUGcGUCGCCaAGC- -5'
25042 5' -62.7 NC_005336.1 + 100867 0.66 0.606406
Target:  5'- aCCaCGCgGCCuuCGCGGCGCGcgcGCGG-UCGg -3'
miRNA:   3'- cGG-GCG-CGG--GCGCUGCGU---CGCCaAGC- -5'
25042 5' -62.7 NC_005336.1 + 115886 0.66 0.606406
Target:  5'- gGCCuCGCaGCCCGCGGcCGCGcGCGcccCGa -3'
miRNA:   3'- -CGG-GCG-CGGGCGCU-GCGU-CGCcaaGC- -5'
25042 5' -62.7 NC_005336.1 + 27449 0.66 0.606406
Target:  5'- gGCCCgaGCGCgCGCGuccACGCcAGCGGcugagCGa -3'
miRNA:   3'- -CGGG--CGCGgGCGC---UGCG-UCGCCaa---GC- -5'
25042 5' -62.7 NC_005336.1 + 79298 0.66 0.587014
Target:  5'- cGUCCGUGaucaCCGCGGUGguGUGGUUg- -3'
miRNA:   3'- -CGGGCGCg---GGCGCUGCguCGCCAAgc -5'
25042 5' -62.7 NC_005336.1 + 9420 0.66 0.587014
Target:  5'- gGCUCGCGaCCuCG-CGCAGCGGguacgccagUCGg -3'
miRNA:   3'- -CGGGCGCgGGcGCuGCGUCGCCa--------AGC- -5'
25042 5' -62.7 NC_005336.1 + 54416 0.66 0.596698
Target:  5'- aCCCGCGCCUG-GGCGCcuCGGa--- -3'
miRNA:   3'- cGGGCGCGGGCgCUGCGucGCCaagc -5'
25042 5' -62.7 NC_005336.1 + 99717 0.66 0.606406
Target:  5'- uGCUCugcgacgagGCGgCCGcCGGCGCGGCGGaUUGc -3'
miRNA:   3'- -CGGG---------CGCgGGC-GCUGCGUCGCCaAGC- -5'
25042 5' -62.7 NC_005336.1 + 20700 0.66 0.59379
Target:  5'- aCCCGCGCggccacgcacuugaCCGCGAagagcagguacCGCAGCGcgUCGu -3'
miRNA:   3'- cGGGCGCG--------------GGCGCU-----------GCGUCGCcaAGC- -5'
25042 5' -62.7 NC_005336.1 + 75968 0.66 0.587014
Target:  5'- aCuuGCGCUCcaugGCGgccGCGCGGCGGUaggccUCGg -3'
miRNA:   3'- cGggCGCGGG----CGC---UGCGUCGCCA-----AGC- -5'
25042 5' -62.7 NC_005336.1 + 139347 0.66 0.606406
Target:  5'- cGCgCGgcCGCCCGCGgcACGCgAGCGGg--- -3'
miRNA:   3'- -CGgGC--GCGGGCGC--UGCG-UCGCCaagc -5'
25042 5' -62.7 NC_005336.1 + 36577 0.66 0.590884
Target:  5'- gGCuuGCGCaCGcCGGCGCcgaucugcuugaagaAGUGGUUCa -3'
miRNA:   3'- -CGggCGCGgGC-GCUGCG---------------UCGCCAAGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.