miRNA display CGI


Results 1 - 20 of 363 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 5' -62.7 NC_005336.1 + 129284 1.09 0.000752
Target:  5'- cGCCCGCGCCCGCGACGCAGCGGUUCGc -3'
miRNA:   3'- -CGGGCGCGGGCGCUGCGUCGCCAAGC- -5'
25042 5' -62.7 NC_005336.1 + 5730 0.88 0.025131
Target:  5'- -gCUGCGUCCGCGugGCAGCGGUUCa -3'
miRNA:   3'- cgGGCGCGGGCGCugCGUCGCCAAGc -5'
25042 5' -62.7 NC_005336.1 + 68049 0.82 0.062274
Target:  5'- cGgCCGCGCCCGCGGgGCAGCGcGUUUu -3'
miRNA:   3'- -CgGGCGCGGGCGCUgCGUCGC-CAAGc -5'
25042 5' -62.7 NC_005336.1 + 134008 0.81 0.074472
Target:  5'- cGCCUGCGCCgugCGCGugGguGCGGUgcgCGg -3'
miRNA:   3'- -CGGGCGCGG---GCGCugCguCGCCAa--GC- -5'
25042 5' -62.7 NC_005336.1 + 12690 0.8 0.095933
Target:  5'- cGUCCGCGCCCGCGGCgaGCAGCaG-UCGc -3'
miRNA:   3'- -CGGGCGCGGGCGCUG--CGUCGcCaAGC- -5'
25042 5' -62.7 NC_005336.1 + 64717 0.8 0.095933
Target:  5'- gGCCCGCGCgCGCGGCGCGGCucg-CGg -3'
miRNA:   3'- -CGGGCGCGgGCGCUGCGUCGccaaGC- -5'
25042 5' -62.7 NC_005336.1 + 29019 0.79 0.098376
Target:  5'- aCCCGCaGCCCgGCGGCaGCGGCGGcUUCGa -3'
miRNA:   3'- cGGGCG-CGGG-CGCUG-CGUCGCC-AAGC- -5'
25042 5' -62.7 NC_005336.1 + 68415 0.79 0.100877
Target:  5'- cGCCCGCGCUCGCGccccCGCuGCGGgcgCGg -3'
miRNA:   3'- -CGGGCGCGGGCGCu---GCGuCGCCaa-GC- -5'
25042 5' -62.7 NC_005336.1 + 71328 0.78 0.120137
Target:  5'- uCCUGCGCCUGCucgUGCAGUGGUUCGg -3'
miRNA:   3'- cGGGCGCGGGCGcu-GCGUCGCCAAGC- -5'
25042 5' -62.7 NC_005336.1 + 3714 0.78 0.12624
Target:  5'- gGCCgggagagGCGCCCGgGGCGCGGCGGgcgCGg -3'
miRNA:   3'- -CGGg------CGCGGGCgCUGCGUCGCCaa-GC- -5'
25042 5' -62.7 NC_005336.1 + 3714 0.78 0.12624
Target:  5'- gGCCgggagagGCGCCCGgGGCGCGGCGGgcgCGg -3'
miRNA:   3'- -CGGg------CGCGGGCgCUGCGUCGCCaa-GC- -5'
25042 5' -62.7 NC_005336.1 + 121751 0.77 0.13263
Target:  5'- gGCCCGCGCCCGUgcucaaGAUGgAGCGGcUCu -3'
miRNA:   3'- -CGGGCGCGGGCG------CUGCgUCGCCaAGc -5'
25042 5' -62.7 NC_005336.1 + 16258 0.77 0.139315
Target:  5'- gGUCCGCGCCCGCG-CGCAGCa----- -3'
miRNA:   3'- -CGGGCGCGGGCGCuGCGUCGccaagc -5'
25042 5' -62.7 NC_005336.1 + 37201 0.76 0.165212
Target:  5'- cGUCCGCGCCCGCGG-GCA-CGGUcuUCGc -3'
miRNA:   3'- -CGGGCGCGGGCGCUgCGUcGCCA--AGC- -5'
25042 5' -62.7 NC_005336.1 + 130014 0.76 0.165612
Target:  5'- cGCuUCGCGCCCGCGACGCucuucuccgaguacuGCGaGUUCu -3'
miRNA:   3'- -CG-GGCGCGGGCGCUGCGu--------------CGC-CAAGc -5'
25042 5' -62.7 NC_005336.1 + 80657 0.76 0.17337
Target:  5'- cGCCCGCG-CCGCGGCGCA-CGGcuugCGg -3'
miRNA:   3'- -CGGGCGCgGGCGCUGCGUcGCCaa--GC- -5'
25042 5' -62.7 NC_005336.1 + 15108 0.75 0.181885
Target:  5'- gGUCgGCGCCCGcCGACGCcGCGGgcCGc -3'
miRNA:   3'- -CGGgCGCGGGC-GCUGCGuCGCCaaGC- -5'
25042 5' -62.7 NC_005336.1 + 71435 0.75 0.181885
Target:  5'- cGCCgGCGCCCGCG-CGUcgaaGGCGGcUUCc -3'
miRNA:   3'- -CGGgCGCGGGCGCuGCG----UCGCC-AAGc -5'
25042 5' -62.7 NC_005336.1 + 15845 0.75 0.190769
Target:  5'- cGUCCGCGCCCGCGGCgaugagccgcgaGCAGaCGGa--- -3'
miRNA:   3'- -CGGGCGCGGGCGCUG------------CGUC-GCCaagc -5'
25042 5' -62.7 NC_005336.1 + 98178 0.75 0.190769
Target:  5'- -aCCGUGUCUGCGuuuGCGCAGCGGcUCGu -3'
miRNA:   3'- cgGGCGCGGGCGC---UGCGUCGCCaAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.