miRNA display CGI


Results 21 - 40 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25044 5' -49.5 NC_005336.1 + 18294 0.66 0.996764
Target:  5'- ---gGGAGCGC--AAGGUCCGcgcaaggggggagcGACGCc -3'
miRNA:   3'- uuaaUUUCGCGccUUCCAGGC--------------UUGCG- -5'
25044 5' -49.5 NC_005336.1 + 106678 0.66 0.996924
Target:  5'- ------cGUGCGGcGGGGagUGAGCGCg -3'
miRNA:   3'- uuaauuuCGCGCC-UUCCagGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 75595 0.66 0.997412
Target:  5'- ---gAAGGCGCGGAAGua--GAGCaGCa -3'
miRNA:   3'- uuaaUUUCGCGCCUUCcaggCUUG-CG- -5'
25044 5' -49.5 NC_005336.1 + 129924 0.66 0.996363
Target:  5'- --aUGGAGCucgcCGGcAAGGgCUGGACGCg -3'
miRNA:   3'- uuaAUUUCGc---GCC-UUCCaGGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 5751 0.66 0.997412
Target:  5'- -----uGGCGCGGcgcAGGUCC-AGCaGCg -3'
miRNA:   3'- uuaauuUCGCGCCu--UCCAGGcUUG-CG- -5'
25044 5' -49.5 NC_005336.1 + 50788 0.66 0.994988
Target:  5'- ------uGCGCGGc--GUCgGAGCGCa -3'
miRNA:   3'- uuaauuuCGCGCCuucCAGgCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 118365 0.66 0.996924
Target:  5'- -----uAGCGCGGuAGGcCUgGAugGCg -3'
miRNA:   3'- uuaauuUCGCGCCuUCCaGG-CUugCG- -5'
25044 5' -49.5 NC_005336.1 + 89253 0.66 0.995721
Target:  5'- ----cGGGCGaaaGGggGGUUCGccCGCu -3'
miRNA:   3'- uuaauUUCGCg--CCuuCCAGGCuuGCG- -5'
25044 5' -49.5 NC_005336.1 + 123207 0.66 0.994988
Target:  5'- ------cGCGCuGGAcugcGGGUUCGcGCGCg -3'
miRNA:   3'- uuaauuuCGCG-CCU----UCCAGGCuUGCG- -5'
25044 5' -49.5 NC_005336.1 + 125921 0.66 0.996363
Target:  5'- --cUAcGGCGCGGu-GGUCgCG-GCGCc -3'
miRNA:   3'- uuaAUuUCGCGCCuuCCAG-GCuUGCG- -5'
25044 5' -49.5 NC_005336.1 + 132988 0.66 0.995721
Target:  5'- ----cGAGCGCGaGuucguGGUCUGcGCGCu -3'
miRNA:   3'- uuaauUUCGCGC-Cuu---CCAGGCuUGCG- -5'
25044 5' -49.5 NC_005336.1 + 74056 0.67 0.993218
Target:  5'- ---cGAGGCGCGc----UCCGGACGCg -3'
miRNA:   3'- uuaaUUUCGCGCcuuccAGGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 40480 0.67 0.994157
Target:  5'- ---gAAGGUGUGGAAGagccgcgcGUCCGcgUGCa -3'
miRNA:   3'- uuaaUUUCGCGCCUUC--------CAGGCuuGCG- -5'
25044 5' -49.5 NC_005336.1 + 91048 0.67 0.990981
Target:  5'- ---aAAAGCacacGCGGAGGGgcuccuugCCGGcCGCg -3'
miRNA:   3'- uuaaUUUCG----CGCCUUCCa-------GGCUuGCG- -5'
25044 5' -49.5 NC_005336.1 + 88918 0.67 0.991822
Target:  5'- ---cGAGGCGCGGAcucuguGG-CCGAggccuucgacguccGCGCc -3'
miRNA:   3'- uuaaUUUCGCGCCUu-----CCaGGCU--------------UGCG- -5'
25044 5' -49.5 NC_005336.1 + 66145 0.67 0.992163
Target:  5'- ------cGCGCGGAGagaaGUCCaAGCGCg -3'
miRNA:   3'- uuaauuuCGCGCCUUc---CAGGcUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 35816 0.67 0.989663
Target:  5'- ---gAAGGCGCcGAGGGgaacugCCGGugGUc -3'
miRNA:   3'- uuaaUUUCGCGcCUUCCa-----GGCUugCG- -5'
25044 5' -49.5 NC_005336.1 + 29990 0.67 0.992163
Target:  5'- ----cGAGCGCGG--GGUC-GAugGCg -3'
miRNA:   3'- uuaauUUCGCGCCuuCCAGgCUugCG- -5'
25044 5' -49.5 NC_005336.1 + 127304 0.67 0.989663
Target:  5'- -----cGGCGCGGAGGcGgCCGugauCGCa -3'
miRNA:   3'- uuaauuUCGCGCCUUC-CaGGCuu--GCG- -5'
25044 5' -49.5 NC_005336.1 + 136386 0.67 0.993978
Target:  5'- ------cGCGCGGcacauggcggcGGUCgCGGACGCg -3'
miRNA:   3'- uuaauuuCGCGCCuu---------CCAG-GCUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.