Results 1 - 20 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25044 | 5' | -49.5 | NC_005336.1 | + | 98641 | 0.66 | 0.997412 |
Target: 5'- ---cGAAGCGCGcGGA-GUCCGccucCGCg -3' miRNA: 3'- uuaaUUUCGCGC-CUUcCAGGCuu--GCG- -5' |
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25044 | 5' | -49.5 | NC_005336.1 | + | 122689 | 0.66 | 0.995721 |
Target: 5'- ----cGAGCGCGGcuGGgCCGuccucgagacgGACGCg -3' miRNA: 3'- uuaauUUCGCGCCuuCCaGGC-----------UUGCG- -5' |
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25044 | 5' | -49.5 | NC_005336.1 | + | 86278 | 0.66 | 0.995721 |
Target: 5'- ------cGCGCGGA--GUCCGGcuccACGCc -3' miRNA: 3'- uuaauuuCGCGCCUucCAGGCU----UGCG- -5' |
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25044 | 5' | -49.5 | NC_005336.1 | + | 128070 | 0.66 | 0.996363 |
Target: 5'- ----uGAGUGCGGAGaGcgCgCGAGCGCa -3' miRNA: 3'- uuaauUUCGCGCCUUcCa-G-GCUUGCG- -5' |
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25044 | 5' | -49.5 | NC_005336.1 | + | 21462 | 0.66 | 0.996363 |
Target: 5'- ------uGCGCGGAGcugcuGG-CCGAcGCGCg -3' miRNA: 3'- uuaauuuCGCGCCUU-----CCaGGCU-UGCG- -5' |
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25044 | 5' | -49.5 | NC_005336.1 | + | 27241 | 0.66 | 0.997412 |
Target: 5'- -----cAGCGCGG--GGUCC--ACGCg -3' miRNA: 3'- uuaauuUCGCGCCuuCCAGGcuUGCG- -5' |
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25044 | 5' | -49.5 | NC_005336.1 | + | 123968 | 0.66 | 0.996363 |
Target: 5'- ----cGGGCGCGGAcGuGaCCGcGCGCa -3' miRNA: 3'- uuaauUUCGCGCCUuC-CaGGCuUGCG- -5' |
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25044 | 5' | -49.5 | NC_005336.1 | + | 75595 | 0.66 | 0.997412 |
Target: 5'- ---gAAGGCGCGGAAGua--GAGCaGCa -3' miRNA: 3'- uuaaUUUCGCGCCUUCcaggCUUG-CG- -5' |
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25044 | 5' | -49.5 | NC_005336.1 | + | 41290 | 0.66 | 0.994988 |
Target: 5'- ------cGCGCuGGuAGGUCCG-GCGUg -3' miRNA: 3'- uuaauuuCGCG-CCuUCCAGGCuUGCG- -5' |
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25044 | 5' | -49.5 | NC_005336.1 | + | 8819 | 0.66 | 0.997412 |
Target: 5'- -----cAGCGCcaGAAucacGUCCGAGCGCg -3' miRNA: 3'- uuaauuUCGCGc-CUUc---CAGGCUUGCG- -5' |
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25044 | 5' | -49.5 | NC_005336.1 | + | 5751 | 0.66 | 0.997412 |
Target: 5'- -----uGGCGCGGcgcAGGUCC-AGCaGCg -3' miRNA: 3'- uuaauuUCGCGCCu--UCCAGGcUUG-CG- -5' |
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25044 | 5' | -49.5 | NC_005336.1 | + | 125249 | 0.66 | 0.996363 |
Target: 5'- --aUGGuGCGCGuGAucGUgCCGGGCGCg -3' miRNA: 3'- uuaAUUuCGCGC-CUucCA-GGCUUGCG- -5' |
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25044 | 5' | -49.5 | NC_005336.1 | + | 32673 | 0.66 | 0.996872 |
Target: 5'- ----cGGGCGCGGuGAGGUCgGGggugacgaugaggAUGCa -3' miRNA: 3'- uuaauUUCGCGCC-UUCCAGgCU-------------UGCG- -5' |
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25044 | 5' | -49.5 | NC_005336.1 | + | 17929 | 0.66 | 0.995652 |
Target: 5'- ---aAGAGCGCGuccauggccaucuGguGGUCCGAGCa- -3' miRNA: 3'- uuaaUUUCGCGC-------------CuuCCAGGCUUGcg -5' |
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25044 | 5' | -49.5 | NC_005336.1 | + | 85193 | 0.66 | 0.997273 |
Target: 5'- ----uGAGCGCGGccAcguccgccguguacGGGUCgcgCGAGCGCa -3' miRNA: 3'- uuaauUUCGCGCC--U--------------UCCAG---GCUUGCG- -5' |
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25044 | 5' | -49.5 | NC_005336.1 | + | 7226 | 0.66 | 0.996924 |
Target: 5'- ----cAGGUaGCGGAagagcAGGUCCGcgUGCg -3' miRNA: 3'- uuaauUUCG-CGCCU-----UCCAGGCuuGCG- -5' |
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25044 | 5' | -49.5 | NC_005336.1 | + | 34270 | 0.66 | 0.995721 |
Target: 5'- gAGUUGGAGa--GGAAGGagCCGAagACGCc -3' miRNA: 3'- -UUAAUUUCgcgCCUUCCa-GGCU--UGCG- -5' |
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25044 | 5' | -49.5 | NC_005336.1 | + | 6144 | 0.66 | 0.997412 |
Target: 5'- -----cAGCGCGGcc--UCCGAGCGUu -3' miRNA: 3'- uuaauuUCGCGCCuuccAGGCUUGCG- -5' |
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25044 | 5' | -49.5 | NC_005336.1 | + | 132988 | 0.66 | 0.995721 |
Target: 5'- ----cGAGCGCGaGuucguGGUCUGcGCGCu -3' miRNA: 3'- uuaauUUCGCGC-Cuu---CCAGGCuUGCG- -5' |
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25044 | 5' | -49.5 | NC_005336.1 | + | 32981 | 0.66 | 0.995721 |
Target: 5'- --gUGGGGCccGCGGGAGGcucgugCCGGucCGCg -3' miRNA: 3'- uuaAUUUCG--CGCCUUCCa-----GGCUu-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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