miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25044 5' -49.5 NC_005336.1 + 3527 0.72 0.915074
Target:  5'- -----cGGgGCGGAAGaGcgcgCCGAGCGCg -3'
miRNA:   3'- uuaauuUCgCGCCUUC-Ca---GGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 3527 0.72 0.915074
Target:  5'- -----cGGgGCGGAAGaGcgcgCCGAGCGCg -3'
miRNA:   3'- uuaauuUCgCGCCUUC-Ca---GGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 3639 0.7 0.963438
Target:  5'- -----cGGCGggaGGGAGGUCUGcGCGCc -3'
miRNA:   3'- uuaauuUCGCg--CCUUCCAGGCuUGCG- -5'
25044 5' -49.5 NC_005336.1 + 3639 0.7 0.963438
Target:  5'- -----cGGCGggaGGGAGGUCUGcGCGCc -3'
miRNA:   3'- uuaauuUCGCg--CCUUCCAGGCuUGCG- -5'
25044 5' -49.5 NC_005336.1 + 3740 0.72 0.915074
Target:  5'- ----cGGGCGCGGuGAGGgaagCCGGcGCGCg -3'
miRNA:   3'- uuaauUUCGCGCC-UUCCa---GGCU-UGCG- -5'
25044 5' -49.5 NC_005336.1 + 3740 0.72 0.915074
Target:  5'- ----cGGGCGCGGuGAGGgaagCCGGcGCGCg -3'
miRNA:   3'- uuaauUUCGCGCC-UUCCa---GGCU-UGCG- -5'
25044 5' -49.5 NC_005336.1 + 5751 0.66 0.997412
Target:  5'- -----uGGCGCGGcgcAGGUCC-AGCaGCg -3'
miRNA:   3'- uuaauuUCGCGCCu--UCCAGGcUUG-CG- -5'
25044 5' -49.5 NC_005336.1 + 6144 0.66 0.997412
Target:  5'- -----cAGCGCGGcc--UCCGAGCGUu -3'
miRNA:   3'- uuaauuUCGCGCCuuccAGGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 7226 0.66 0.996924
Target:  5'- ----cAGGUaGCGGAagagcAGGUCCGcgUGCg -3'
miRNA:   3'- uuaauUUCG-CGCCU-----UCCAGGCuuGCG- -5'
25044 5' -49.5 NC_005336.1 + 7606 0.68 0.988199
Target:  5'- -----cAGCGCGGGAGaGUggagucgagaUCGGAUGCg -3'
miRNA:   3'- uuaauuUCGCGCCUUC-CA----------GGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 8819 0.66 0.997412
Target:  5'- -----cAGCGCcaGAAucacGUCCGAGCGCg -3'
miRNA:   3'- uuaauuUCGCGc-CUUc---CAGGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 9022 0.69 0.978348
Target:  5'- ---gAAGGCGCGGAccaccgCCGAGCaGCg -3'
miRNA:   3'- uuaaUUUCGCGCCUucca--GGCUUG-CG- -5'
25044 5' -49.5 NC_005336.1 + 9636 0.72 0.908785
Target:  5'- ----cGAGCGCGGccuGGUgCgCGAGCGCu -3'
miRNA:   3'- uuaauUUCGCGCCuu-CCA-G-GCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 9804 0.74 0.814132
Target:  5'- ---cGAAGCGCGcGAGGUCCacGAAgGCg -3'
miRNA:   3'- uuaaUUUCGCGCcUUCCAGG--CUUgCG- -5'
25044 5' -49.5 NC_005336.1 + 10081 0.68 0.984794
Target:  5'- -----cAGCGCGGcgauGGUgcCCGggUGCg -3'
miRNA:   3'- uuaauuUCGCGCCuu--CCA--GGCuuGCG- -5'
25044 5' -49.5 NC_005336.1 + 10409 0.7 0.955835
Target:  5'- -----cGGCGCGGAgcucGGGcUCCGucuccGCGCg -3'
miRNA:   3'- uuaauuUCGCGCCU----UCC-AGGCu----UGCG- -5'
25044 5' -49.5 NC_005336.1 + 11709 0.67 0.990981
Target:  5'- ----cAGGCGCGGAucgcGG-CCGcguGCGCu -3'
miRNA:   3'- uuaauUUCGCGCCUu---CCaGGCu--UGCG- -5'
25044 5' -49.5 NC_005336.1 + 11946 0.72 0.915074
Target:  5'- ---gAGAGCGCGG--GGUCCGcgccCGCg -3'
miRNA:   3'- uuaaUUUCGCGCCuuCCAGGCuu--GCG- -5'
25044 5' -49.5 NC_005336.1 + 17929 0.66 0.995652
Target:  5'- ---aAGAGCGCGuccauggccaucuGguGGUCCGAGCa- -3'
miRNA:   3'- uuaaUUUCGCGC-------------CuuCCAGGCUUGcg -5'
25044 5' -49.5 NC_005336.1 + 18294 0.66 0.996764
Target:  5'- ---gGGAGCGC--AAGGUCCGcgcaaggggggagcGACGCc -3'
miRNA:   3'- uuaaUUUCGCGccUUCCAGGC--------------UUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.