miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25044 5' -49.5 NC_005336.1 + 60161 0.7 0.955835
Target:  5'- -----cGGCGCGGGAGGa--GAugGCu -3'
miRNA:   3'- uuaauuUCGCGCCUUCCaggCUugCG- -5'
25044 5' -49.5 NC_005336.1 + 94301 0.71 0.921098
Target:  5'- -cUUGuuGCGCGGAacggcGGGcgCCGAgACGCa -3'
miRNA:   3'- uuAAUuuCGCGCCU-----UCCa-GGCU-UGCG- -5'
25044 5' -49.5 NC_005336.1 + 89111 0.71 0.926855
Target:  5'- ------cGCGCGcGGAGG-CCGAGCGg -3'
miRNA:   3'- uuaauuuCGCGC-CUUCCaGGCUUGCg -5'
25044 5' -49.5 NC_005336.1 + 45354 0.71 0.932346
Target:  5'- ---cGGAGuCGCGGAGguGGUCCuGAACGg -3'
miRNA:   3'- uuaaUUUC-GCGCCUU--CCAGG-CUUGCg -5'
25044 5' -49.5 NC_005336.1 + 67567 0.71 0.937569
Target:  5'- -----cGGCGCGGAAGGcgUUGAACaGCu -3'
miRNA:   3'- uuaauuUCGCGCCUUCCa-GGCUUG-CG- -5'
25044 5' -49.5 NC_005336.1 + 33882 0.7 0.947222
Target:  5'- ------cGuCGCGGuAGGcgCCGAGCGCg -3'
miRNA:   3'- uuaauuuC-GCGCCuUCCa-GGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 95488 0.7 0.947222
Target:  5'- ------cGCGCGGGcccAGGUacuucCCGAGCGUg -3'
miRNA:   3'- uuaauuuCGCGCCU---UCCA-----GGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 77363 0.7 0.947222
Target:  5'- ---gGAAGUGCaGGugcGGG-CCGAGCGCc -3'
miRNA:   3'- uuaaUUUCGCG-CCu--UCCaGGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 10409 0.7 0.955835
Target:  5'- -----cGGCGCGGAgcucGGGcUCCGucuccGCGCg -3'
miRNA:   3'- uuaauuUCGCGCCU----UCC-AGGCu----UGCG- -5'
25044 5' -49.5 NC_005336.1 + 3740 0.72 0.915074
Target:  5'- ----cGGGCGCGGuGAGGgaagCCGGcGCGCg -3'
miRNA:   3'- uuaauUUCGCGCC-UUCCa---GGCU-UGCG- -5'
25044 5' -49.5 NC_005336.1 + 3527 0.72 0.915074
Target:  5'- -----cGGgGCGGAAGaGcgcgCCGAGCGCg -3'
miRNA:   3'- uuaauuUCgCGCCUUC-Ca---GGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 9636 0.72 0.908785
Target:  5'- ----cGAGCGCGGccuGGUgCgCGAGCGCu -3'
miRNA:   3'- uuaauUUCGCGCCuu-CCA-G-GCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 87937 0.79 0.575046
Target:  5'- -----cGGCGCGGAGGuGUCCGccGCGCg -3'
miRNA:   3'- uuaauuUCGCGCCUUC-CAGGCu-UGCG- -5'
25044 5' -49.5 NC_005336.1 + 58975 0.77 0.693489
Target:  5'- ---aAGAGCGCGGugcGGUCCuGGCGCc -3'
miRNA:   3'- uuaaUUUCGCGCCuu-CCAGGcUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 9804 0.74 0.814132
Target:  5'- ---cGAAGCGCGcGAGGUCCacGAAgGCg -3'
miRNA:   3'- uuaaUUUCGCGCcUUCCAGG--CUUgCG- -5'
25044 5' -49.5 NC_005336.1 + 126969 0.73 0.849335
Target:  5'- ---gAGAGCGaGGAGcGUCCGGACGUg -3'
miRNA:   3'- uuaaUUUCGCgCCUUcCAGGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 138894 0.73 0.857607
Target:  5'- ---aGGAGCGCGGAGGG-CgGGuCGCc -3'
miRNA:   3'- uuaaUUUCGCGCCUUCCaGgCUuGCG- -5'
25044 5' -49.5 NC_005336.1 + 99949 0.72 0.89542
Target:  5'- ------cGUGCGGAGGGcgCCGuGCGCc -3'
miRNA:   3'- uuaauuuCGCGCCUUCCa-GGCuUGCG- -5'
25044 5' -49.5 NC_005336.1 + 91658 0.72 0.908785
Target:  5'- cAUUcuGGCGCGGGAGGcgUCGGugagcaGCGCg -3'
miRNA:   3'- uUAAuuUCGCGCCUUCCa-GGCU------UGCG- -5'
25044 5' -49.5 NC_005336.1 + 109579 0.72 0.908785
Target:  5'- ---cGGAGCGCGGcucgcgcGGGUCCGGcggcACGUc -3'
miRNA:   3'- uuaaUUUCGCGCCu------UCCAGGCU----UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.