miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25044 5' -49.5 NC_005336.1 + 128977 1.09 0.010053
Target:  5'- aAAUUAAAGCGCGGAAGGUCCGAACGCc -3'
miRNA:   3'- -UUAAUUUCGCGCCUUCCAGGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 132146 0.83 0.395971
Target:  5'- -----uAGUGCGGGAGGUCCGuguguACGCa -3'
miRNA:   3'- uuaauuUCGCGCCUUCCAGGCu----UGCG- -5'
25044 5' -49.5 NC_005336.1 + 63082 0.81 0.491568
Target:  5'- ---cAGGGCGUGGAGGaGUCCGuGCGCc -3'
miRNA:   3'- uuaaUUUCGCGCCUUC-CAGGCuUGCG- -5'
25044 5' -49.5 NC_005336.1 + 87937 0.79 0.575046
Target:  5'- -----cGGCGCGGAGGuGUCCGccGCGCg -3'
miRNA:   3'- uuaauuUCGCGCCUUC-CAGGCu-UGCG- -5'
25044 5' -49.5 NC_005336.1 + 70409 0.79 0.585759
Target:  5'- ---cGAAGCGCGGGuccUCCGAGCGCc -3'
miRNA:   3'- uuaaUUUCGCGCCUuccAGGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 84638 0.78 0.628899
Target:  5'- ---gAGAGCGCGGAgucGGGcccgaugaCCGAGCGCg -3'
miRNA:   3'- uuaaUUUCGCGCCU---UCCa-------GGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 123791 0.77 0.668852
Target:  5'- ----uGAGCGgGGAGGGUCCaucuugagcacgcaGGACGCg -3'
miRNA:   3'- uuaauUUCGCgCCUUCCAGG--------------CUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 135809 0.77 0.682807
Target:  5'- ------cGCGCGGGcggcGGGcCCGGACGCg -3'
miRNA:   3'- uuaauuuCGCGCCU----UCCaGGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 58975 0.77 0.693489
Target:  5'- ---aAGAGCGCGGugcGGUCCuGGCGCc -3'
miRNA:   3'- uuaaUUUCGCGCCuu-CCAGGcUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 93962 0.75 0.775983
Target:  5'- -----uGGUGCGGgcGGgcgcgCCGGACGCg -3'
miRNA:   3'- uuaauuUCGCGCCuuCCa----GGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 9804 0.74 0.814132
Target:  5'- ---cGAAGCGCGcGAGGUCCacGAAgGCg -3'
miRNA:   3'- uuaaUUUCGCGCcUUCCAGG--CUUgCG- -5'
25044 5' -49.5 NC_005336.1 + 126969 0.73 0.849335
Target:  5'- ---gAGAGCGaGGAGcGUCCGGACGUg -3'
miRNA:   3'- uuaaUUUCGCgCCUUcCAGGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 138894 0.73 0.857607
Target:  5'- ---aGGAGCGCGGAGGG-CgGGuCGCc -3'
miRNA:   3'- uuaaUUUCGCGCCUUCCaGgCUuGCG- -5'
25044 5' -49.5 NC_005336.1 + 138894 0.73 0.857607
Target:  5'- ---aGGAGCGCGGAGGG-CgGGuCGCc -3'
miRNA:   3'- uuaaUUUCGCGCCUUCCaGgCUuGCG- -5'
25044 5' -49.5 NC_005336.1 + 23611 0.72 0.89542
Target:  5'- -uUUGGAGgGCGGGgugGGGUCgGAGgGCc -3'
miRNA:   3'- uuAAUUUCgCGCCU---UCCAGgCUUgCG- -5'
25044 5' -49.5 NC_005336.1 + 99949 0.72 0.89542
Target:  5'- ------cGUGCGGAGGGcgCCGuGCGCc -3'
miRNA:   3'- uuaauuuCGCGCCUUCCa-GGCuUGCG- -5'
25044 5' -49.5 NC_005336.1 + 9636 0.72 0.908785
Target:  5'- ----cGAGCGCGGccuGGUgCgCGAGCGCu -3'
miRNA:   3'- uuaauUUCGCGCCuu-CCA-G-GCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 91658 0.72 0.908785
Target:  5'- cAUUcuGGCGCGGGAGGcgUCGGugagcaGCGCg -3'
miRNA:   3'- uUAAuuUCGCGCCUUCCa-GGCU------UGCG- -5'
25044 5' -49.5 NC_005336.1 + 109579 0.72 0.908785
Target:  5'- ---cGGAGCGCGGcucgcgcGGGUCCGGcggcACGUc -3'
miRNA:   3'- uuaaUUUCGCGCCu------UCCAGGCU----UGCG- -5'
25044 5' -49.5 NC_005336.1 + 3740 0.72 0.915074
Target:  5'- ----cGGGCGCGGuGAGGgaagCCGGcGCGCg -3'
miRNA:   3'- uuaauUUCGCGCC-UUCCa---GGCU-UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.