miRNA display CGI


Results 41 - 60 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25044 5' -49.5 NC_005336.1 + 68219 0.67 0.992163
Target:  5'- ------cGCGCGGAggAGG-CCucGCGCg -3'
miRNA:   3'- uuaauuuCGCGCCU--UCCaGGcuUGCG- -5'
25044 5' -49.5 NC_005336.1 + 61880 0.67 0.992163
Target:  5'- -----cGGCGCGcGAGG-CCGGGCGg -3'
miRNA:   3'- uuaauuUCGCGCcUUCCaGGCUUGCg -5'
25044 5' -49.5 NC_005336.1 + 80464 0.67 0.992163
Target:  5'- -----cGGCGCGGAuauGUCCacccgcgaGAGCGCu -3'
miRNA:   3'- uuaauuUCGCGCCUuc-CAGG--------CUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 65300 0.67 0.992163
Target:  5'- ---cGAGGCGCGcGAgAGcGUCCGcgUGCu -3'
miRNA:   3'- uuaaUUUCGCGC-CU-UC-CAGGCuuGCG- -5'
25044 5' -49.5 NC_005336.1 + 106755 0.67 0.992163
Target:  5'- --gUAGGGaUGUGGAuGGcCUGGGCGCg -3'
miRNA:   3'- uuaAUUUC-GCGCCUuCCaGGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 88918 0.67 0.991822
Target:  5'- ---cGAGGCGCGGAcucuguGG-CCGAggccuucgacguccGCGCc -3'
miRNA:   3'- uuaaUUUCGCGCCUu-----CCaGGCU--------------UGCG- -5'
25044 5' -49.5 NC_005336.1 + 103377 0.67 0.990981
Target:  5'- ---gAAGGCGCucgcGGUCgCGAGCGCc -3'
miRNA:   3'- uuaaUUUCGCGccuuCCAG-GCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 11709 0.67 0.990981
Target:  5'- ----cAGGCGCGGAucgcGG-CCGcguGCGCu -3'
miRNA:   3'- uuaauUUCGCGCCUu---CCaGGCu--UGCG- -5'
25044 5' -49.5 NC_005336.1 + 55859 0.67 0.990981
Target:  5'- ----cGGGCGCGuGguGGcgCCGAACGUc -3'
miRNA:   3'- uuaauUUCGCGC-CuuCCa-GGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 91048 0.67 0.990981
Target:  5'- ---aAAAGCacacGCGGAGGGgcuccuugCCGGcCGCg -3'
miRNA:   3'- uuaaUUUCG----CGCCUUCCa-------GGCUuGCG- -5'
25044 5' -49.5 NC_005336.1 + 127304 0.67 0.989663
Target:  5'- -----cGGCGCGGAGGcGgCCGugauCGCa -3'
miRNA:   3'- uuaauuUCGCGCCUUC-CaGGCuu--GCG- -5'
25044 5' -49.5 NC_005336.1 + 127017 0.67 0.989663
Target:  5'- ---gAGGGCGCGGAcgugaacuacgcGGGcCCGcgcggguACGCg -3'
miRNA:   3'- uuaaUUUCGCGCCU------------UCCaGGCu------UGCG- -5'
25044 5' -49.5 NC_005336.1 + 35816 0.67 0.989663
Target:  5'- ---gAAGGCGCcGAGGGgaacugCCGGugGUc -3'
miRNA:   3'- uuaaUUUCGCGcCUUCCa-----GGCUugCG- -5'
25044 5' -49.5 NC_005336.1 + 100043 0.67 0.989663
Target:  5'- -----cGGCGCGGAuGGcCuCGGugGCc -3'
miRNA:   3'- uuaauuUCGCGCCUuCCaG-GCUugCG- -5'
25044 5' -49.5 NC_005336.1 + 40284 0.67 0.989663
Target:  5'- ---cGAGGCGCGc--GGUCCGcuauccagcGGCGCg -3'
miRNA:   3'- uuaaUUUCGCGCcuuCCAGGC---------UUGCG- -5'
25044 5' -49.5 NC_005336.1 + 53522 0.67 0.989663
Target:  5'- ----uGGGCGUGGAGccGGacUCCGcGCGCg -3'
miRNA:   3'- uuaauUUCGCGCCUU--CC--AGGCuUGCG- -5'
25044 5' -49.5 NC_005336.1 + 92745 0.68 0.988199
Target:  5'- ---aGAAGCGCucGAGGU-CGGGCGCc -3'
miRNA:   3'- uuaaUUUCGCGccUUCCAgGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 35793 0.68 0.988199
Target:  5'- ------uGcCGCGGAAGGacaUGAGCGCg -3'
miRNA:   3'- uuaauuuC-GCGCCUUCCag-GCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 7606 0.68 0.988199
Target:  5'- -----cAGCGCGGGAGaGUggagucgagaUCGGAUGCg -3'
miRNA:   3'- uuaauuUCGCGCCUUC-CA----------GGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 122157 0.68 0.988044
Target:  5'- ----uAAGCGCGGAGGGcgugaugacCCGGcccgccagcaacuGCGCg -3'
miRNA:   3'- uuaauUUCGCGCCUUCCa--------GGCU-------------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.