miRNA display CGI


Results 1 - 20 of 668 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25045 3' -55.3 NC_005336.1 + 14634 0.66 0.943887
Target:  5'- --cGCCUCucgcaGGCACGCcACcGCCGUg -3'
miRNA:   3'- gguUGGAGcug--CCGUGCG-UGaUGGCG- -5'
25045 3' -55.3 NC_005336.1 + 91331 0.66 0.943887
Target:  5'- aCGGCCUucaUGACGGCGuccagcUGCGC-GCCGg -3'
miRNA:   3'- gGUUGGA---GCUGCCGU------GCGUGaUGGCg -5'
25045 3' -55.3 NC_005336.1 + 111803 0.66 0.943887
Target:  5'- -aAGCCgcgCGAgGGCAuCGCGgUgACCGUg -3'
miRNA:   3'- ggUUGGa--GCUgCCGU-GCGUgA-UGGCG- -5'
25045 3' -55.3 NC_005336.1 + 97383 0.66 0.943887
Target:  5'- uCCAGCagCUCGucguUGGCGCGgCAC-ACgCGCa -3'
miRNA:   3'- -GGUUG--GAGCu---GCCGUGC-GUGaUG-GCG- -5'
25045 3' -55.3 NC_005336.1 + 50057 0.66 0.943887
Target:  5'- aCGGCCUUG-CGGCA-GCGC-ACCa- -3'
miRNA:   3'- gGUUGGAGCuGCCGUgCGUGaUGGcg -5'
25045 3' -55.3 NC_005336.1 + 111144 0.66 0.943887
Target:  5'- uCguGCC-CGACGcGCACGUGCUcaacaccagGCaCGCa -3'
miRNA:   3'- -GguUGGaGCUGC-CGUGCGUGA---------UG-GCG- -5'
25045 3' -55.3 NC_005336.1 + 83512 0.66 0.943887
Target:  5'- -uGACCUUGuaccCGGCGCGCGCcAUCu- -3'
miRNA:   3'- ggUUGGAGCu---GCCGUGCGUGaUGGcg -5'
25045 3' -55.3 NC_005336.1 + 21095 0.66 0.943887
Target:  5'- uUCGguGCCUUG-CGGCcggagccguUGCGCUugCGCg -3'
miRNA:   3'- -GGU--UGGAGCuGCCGu--------GCGUGAugGCG- -5'
25045 3' -55.3 NC_005336.1 + 112342 0.66 0.943887
Target:  5'- cUCAGCCgcuggCGugGacGCGCGCGCUcggGCC-Ca -3'
miRNA:   3'- -GGUUGGa----GCugC--CGUGCGUGA---UGGcG- -5'
25045 3' -55.3 NC_005336.1 + 130343 0.66 0.943887
Target:  5'- cCCGguGCC-CG-CGGaCGCGCGCUGCUu- -3'
miRNA:   3'- -GGU--UGGaGCuGCC-GUGCGUGAUGGcg -5'
25045 3' -55.3 NC_005336.1 + 77138 0.66 0.943887
Target:  5'- gCCAGCCgCGcACGGCgaagaGCGgGCgcUCGCa -3'
miRNA:   3'- -GGUUGGaGC-UGCCG-----UGCgUGauGGCG- -5'
25045 3' -55.3 NC_005336.1 + 42300 0.66 0.943887
Target:  5'- gCCGGCaagUCGuGCGGCuGCGCcucgagGCUGCgGCg -3'
miRNA:   3'- -GGUUGg--AGC-UGCCG-UGCG------UGAUGgCG- -5'
25045 3' -55.3 NC_005336.1 + 27739 0.66 0.943887
Target:  5'- gCGACCUCGagcgcugcaaGCGGCAgcUGUACgugauCUGCu -3'
miRNA:   3'- gGUUGGAGC----------UGCCGU--GCGUGau---GGCG- -5'
25045 3' -55.3 NC_005336.1 + 87728 0.66 0.943887
Target:  5'- cCCAguGCCgcguccaCGAaGGCGCGCGCgggcCCGUc -3'
miRNA:   3'- -GGU--UGGa------GCUgCCGUGCGUGau--GGCG- -5'
25045 3' -55.3 NC_005336.1 + 127401 0.66 0.943887
Target:  5'- uCCGGCUucuUCGuguCGGCAccgguggcgcuCGCGCUgAUCGCg -3'
miRNA:   3'- -GGUUGG---AGCu--GCCGU-----------GCGUGA-UGGCG- -5'
25045 3' -55.3 NC_005336.1 + 97896 0.66 0.943887
Target:  5'- aCCGugCUCuucccGCGGC-CGgACgcGCCGCa -3'
miRNA:   3'- -GGUugGAGc----UGCCGuGCgUGa-UGGCG- -5'
25045 3' -55.3 NC_005336.1 + 113589 0.66 0.943887
Target:  5'- gCCucuACCUC--UGGU-CGCACUACgGCg -3'
miRNA:   3'- -GGu--UGGAGcuGCCGuGCGUGAUGgCG- -5'
25045 3' -55.3 NC_005336.1 + 56541 0.66 0.943887
Target:  5'- -aGACCUCGcgcACgGGCACGCuc-GCgCGCa -3'
miRNA:   3'- ggUUGGAGC---UG-CCGUGCGugaUG-GCG- -5'
25045 3' -55.3 NC_005336.1 + 36348 0.66 0.94116
Target:  5'- gCCGAUCUCG-CGGUucccgaagaagccgaGC-CGCUugCGCc -3'
miRNA:   3'- -GGUUGGAGCuGCCG---------------UGcGUGAugGCG- -5'
25045 3' -55.3 NC_005336.1 + 17252 0.66 0.939765
Target:  5'- gCGGCUggCGAgCGcGCGCGCGCgggucgcguccacgcGCCGCa -3'
miRNA:   3'- gGUUGGa-GCU-GC-CGUGCGUGa--------------UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.