miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25045 5' -55.1 NC_005336.1 + 47016 0.68 0.865752
Target:  5'- gCGacGGCGUGGuCGCgGAGAAGGagGCg -3'
miRNA:   3'- aGCacUCGCACUuGCGgCUCUUCC--CG- -5'
25045 5' -55.1 NC_005336.1 + 50050 0.7 0.752618
Target:  5'- aCGUGGGCG---ACGCgGAGAucGGCg -3'
miRNA:   3'- aGCACUCGCacuUGCGgCUCUucCCG- -5'
25045 5' -55.1 NC_005336.1 + 50786 0.66 0.939632
Target:  5'- ---cGAGCucGUGGGCaCCGAGAuggugguGGGCg -3'
miRNA:   3'- agcaCUCG--CACUUGcGGCUCUu------CCCG- -5'
25045 5' -55.1 NC_005336.1 + 54294 0.69 0.80825
Target:  5'- ---cGAGCGUGAGCGUCGAu---GGCg -3'
miRNA:   3'- agcaCUCGCACUUGCGGCUcuucCCG- -5'
25045 5' -55.1 NC_005336.1 + 54975 0.7 0.742917
Target:  5'- aUCGUGAaguacuGCuccaUGAACGCCGAGGAGcaGGUc -3'
miRNA:   3'- -AGCACU------CGc---ACUUGCGGCUCUUC--CCG- -5'
25045 5' -55.1 NC_005336.1 + 57501 0.75 0.461966
Target:  5'- cUCGUGAGCGUGucGCgGCCGucguucggaacggGGAucgGGGGCa -3'
miRNA:   3'- -AGCACUCGCACu-UG-CGGC-------------UCU---UCCCG- -5'
25045 5' -55.1 NC_005336.1 + 59986 0.8 0.27894
Target:  5'- uUCGUgcuGAGCGUGGACcugcCCGAGAuaaAGGGCg -3'
miRNA:   3'- -AGCA---CUCGCACUUGc---GGCUCU---UCCCG- -5'
25045 5' -55.1 NC_005336.1 + 61684 0.72 0.652339
Target:  5'- aUCGacGAGCGc-GACGUCGAGAAGGuGCu -3'
miRNA:   3'- -AGCa-CUCGCacUUGCGGCUCUUCC-CG- -5'
25045 5' -55.1 NC_005336.1 + 61908 0.69 0.825602
Target:  5'- gUCGcGcGCGuUGAgcaGCGCCGGGAAGaGGUc -3'
miRNA:   3'- -AGCaCuCGC-ACU---UGCGGCUCUUC-CCG- -5'
25045 5' -55.1 NC_005336.1 + 62704 0.67 0.880374
Target:  5'- gUCGcGAgGCGgcucGACGCCGuGGAGcGGCg -3'
miRNA:   3'- -AGCaCU-CGCac--UUGCGGCuCUUC-CCG- -5'
25045 5' -55.1 NC_005336.1 + 64104 0.67 0.885976
Target:  5'- uUCGUGGGCaagGAccgagucGCGCaCGAguuugccgugcgcGAGGGGCa -3'
miRNA:   3'- -AGCACUCGca-CU-------UGCG-GCU-------------CUUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 64378 0.7 0.73312
Target:  5'- cCGUGcGGCa-GAcCGCCGAGAcaguGGGGCa -3'
miRNA:   3'- aGCAC-UCGcaCUuGCGGCUCU----UCCCG- -5'
25045 5' -55.1 NC_005336.1 + 65326 0.66 0.918784
Target:  5'- cUCGUGgAG-GaGAccGCGCUGcAGGAGGGCu -3'
miRNA:   3'- -AGCAC-UCgCaCU--UGCGGC-UCUUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 65792 0.66 0.924357
Target:  5'- cCGcGAGCGUGcGCGUggaCGAGAAcGGUg -3'
miRNA:   3'- aGCaCUCGCACuUGCG---GCUCUUcCCG- -5'
25045 5' -55.1 NC_005336.1 + 65982 0.67 0.906919
Target:  5'- gUCGcGGcCGUGGccgGCGCCGuGGAGGcGCu -3'
miRNA:   3'- -AGCaCUcGCACU---UGCGGCuCUUCC-CG- -5'
25045 5' -55.1 NC_005336.1 + 67613 0.71 0.682995
Target:  5'- gCGUGAGCGgcguguucgUGAucggcgAgGCCGAGAgcagcaggaAGGGCa -3'
miRNA:   3'- aGCACUCGC---------ACU------UgCGGCUCU---------UCCCG- -5'
25045 5' -55.1 NC_005336.1 + 68197 0.66 0.939632
Target:  5'- cCGUcccuccGCGUGGACGCUGcgcgcGGAGGaGGCc -3'
miRNA:   3'- aGCAcu----CGCACUUGCGGC-----UCUUC-CCG- -5'
25045 5' -55.1 NC_005336.1 + 68424 0.71 0.723234
Target:  5'- gCGUcGGGCGUGGGCGCCagcGAGAccugcGGGa -3'
miRNA:   3'- aGCA-CUCGCACUUGCGG---CUCUu----CCCg -5'
25045 5' -55.1 NC_005336.1 + 69217 0.68 0.842245
Target:  5'- -gGUGAGgaacucgccCGUGGccagguccagcACGCCGuucguGAAGGGCa -3'
miRNA:   3'- agCACUC---------GCACU-----------UGCGGCu----CUUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 72311 0.68 0.864998
Target:  5'- gCGUGcGCGUGAucCG-CGAGGugcucaaGGGGCg -3'
miRNA:   3'- aGCACuCGCACUu-GCgGCUCU-------UCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.