miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25045 5' -55.1 NC_005336.1 + 10114 0.68 0.865752
Target:  5'- gCGUGAacGUGUGGcuGCGCCcAGGAGucGGCg -3'
miRNA:   3'- aGCACU--CGCACU--UGCGGcUCUUC--CCG- -5'
25045 5' -55.1 NC_005336.1 + 11415 0.67 0.887354
Target:  5'- cCGUGGGCGUGAcgacgGCGCagcagagccgCGuGAAcGGCa -3'
miRNA:   3'- aGCACUCGCACU-----UGCG----------GCuCUUcCCG- -5'
25045 5' -55.1 NC_005336.1 + 13283 0.7 0.781039
Target:  5'- aUGUGGGgGUuucGAgaaGCGCgGAGAcgAGGGCg -3'
miRNA:   3'- aGCACUCgCA---CU---UGCGgCUCU--UCCCG- -5'
25045 5' -55.1 NC_005336.1 + 14975 0.77 0.38335
Target:  5'- cCGUGcAGCGgcGAGCGCCGAGcgccGGGCc -3'
miRNA:   3'- aGCAC-UCGCa-CUUGCGGCUCuu--CCCG- -5'
25045 5' -55.1 NC_005336.1 + 16228 0.67 0.906919
Target:  5'- gCGUGAGCccGUGuuCGUCGAGcgccucGGGGUc -3'
miRNA:   3'- aGCACUCG--CACuuGCGGCUCu-----UCCCG- -5'
25045 5' -55.1 NC_005336.1 + 19567 0.73 0.580612
Target:  5'- aUCGUGGuGCGUGGGgGUgGGGGgagGGGGCc -3'
miRNA:   3'- -AGCACU-CGCACUUgCGgCUCU---UCCCG- -5'
25045 5' -55.1 NC_005336.1 + 20257 0.7 0.752618
Target:  5'- cUGUG-GCGUGAuCGCCaGGGGcgcaggcuGGGGCu -3'
miRNA:   3'- aGCACuCGCACUuGCGG-CUCU--------UCCCG- -5'
25045 5' -55.1 NC_005336.1 + 22752 0.67 0.894108
Target:  5'- -aGUGGGUGcuucgcuguuUGAugGCUGAGuAGGuGCa -3'
miRNA:   3'- agCACUCGC----------ACUugCGGCUCuUCC-CG- -5'
25045 5' -55.1 NC_005336.1 + 24131 0.7 0.771688
Target:  5'- ---cGGGCGUc-ACGUCGcAGAAGGGCa -3'
miRNA:   3'- agcaCUCGCAcuUGCGGC-UCUUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 29044 0.68 0.834016
Target:  5'- cUCGccGAcauCGUcGACGCCGAGAccaAGGGCg -3'
miRNA:   3'- -AGCa-CUc--GCAcUUGCGGCUCU---UCCCG- -5'
25045 5' -55.1 NC_005336.1 + 29228 0.66 0.924357
Target:  5'- aUCGUGcGCGgGAACGUCGcGuuGaGGCg -3'
miRNA:   3'- -AGCACuCGCaCUUGCGGCuCuuC-CCG- -5'
25045 5' -55.1 NC_005336.1 + 30074 0.67 0.880374
Target:  5'- aCGUGAGCGcGAACaCCGcGGAGacucGGCc -3'
miRNA:   3'- aGCACUCGCaCUUGcGGCuCUUC----CCG- -5'
25045 5' -55.1 NC_005336.1 + 36553 0.67 0.906919
Target:  5'- cCGcUGGGCGUGAgccGCGUCGc---GGGCu -3'
miRNA:   3'- aGC-ACUCGCACU---UGCGGCucuuCCCG- -5'
25045 5' -55.1 NC_005336.1 + 38364 0.66 0.934781
Target:  5'- gCGUGGGCGUGcucggcaacgcGGCGCCGcu---GGCg -3'
miRNA:   3'- aGCACUCGCAC-----------UUGCGGCucuucCCG- -5'
25045 5' -55.1 NC_005336.1 + 40441 0.68 0.865752
Target:  5'- gCGUGcGCGcGAcgcgcACGCCG-GAGGcGGCg -3'
miRNA:   3'- aGCACuCGCaCU-----UGCGGCuCUUC-CCG- -5'
25045 5' -55.1 NC_005336.1 + 41080 0.7 0.781039
Target:  5'- gCGUGcacGCGcgccaGGAUGCUGuAGAAGGGCg -3'
miRNA:   3'- aGCACu--CGCa----CUUGCGGC-UCUUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 41109 0.7 0.73312
Target:  5'- ---cGcGCGUGAugACGgaCGAGAAGGGCg -3'
miRNA:   3'- agcaCuCGCACU--UGCg-GCUCUUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 43280 0.7 0.739988
Target:  5'- gUCGagGAGCGcgugcagcacuggaUGAGCGuguCCGAGAGcGGGCg -3'
miRNA:   3'- -AGCa-CUCGC--------------ACUUGC---GGCUCUU-CCCG- -5'
25045 5' -55.1 NC_005336.1 + 43678 0.75 0.491289
Target:  5'- gUGUGuGCGUGGacGCGCCGAGGccgcgcguugcGGGCg -3'
miRNA:   3'- aGCACuCGCACU--UGCGGCUCUu----------CCCG- -5'
25045 5' -55.1 NC_005336.1 + 45485 0.71 0.723234
Target:  5'- ---cGAGgGUG-AUGCCGucGAAGGGCg -3'
miRNA:   3'- agcaCUCgCACuUGCGGCu-CUUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.