miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25045 5' -55.1 NC_005336.1 + 128879 1.13 0.001919
Target:  5'- uUCGUGAGCGUGAACGCCGAGAAGGGCg -3'
miRNA:   3'- -AGCACUCGCACUUGCGGCUCUUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 116349 0.84 0.158077
Target:  5'- gCGUGGgguugcugaugcGCGUGAACcCCGAGAAGGGCu -3'
miRNA:   3'- aGCACU------------CGCACUUGcGGCUCUUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 59986 0.8 0.27894
Target:  5'- uUCGUgcuGAGCGUGGACcugcCCGAGAuaaAGGGCg -3'
miRNA:   3'- -AGCA---CUCGCACUUGc---GGCUCU---UCCCG- -5'
25045 5' -55.1 NC_005336.1 + 75133 0.79 0.299252
Target:  5'- cCG-GAGCGcucgucGAGCGCCGGGAAGcGGCg -3'
miRNA:   3'- aGCaCUCGCa-----CUUGCGGCUCUUC-CCG- -5'
25045 5' -55.1 NC_005336.1 + 83800 0.79 0.313418
Target:  5'- aUCGUcGGGCaGcUGGACGCCGGGuacuGGGGCg -3'
miRNA:   3'- -AGCA-CUCG-C-ACUUGCGGCUCu---UCCCG- -5'
25045 5' -55.1 NC_005336.1 + 14975 0.77 0.38335
Target:  5'- cCGUGcAGCGgcGAGCGCCGAGcgccGGGCc -3'
miRNA:   3'- aGCAC-UCGCa-CUUGCGGCUCuu--CCCG- -5'
25045 5' -55.1 NC_005336.1 + 57501 0.75 0.461966
Target:  5'- cUCGUGAGCGUGucGCgGCCGucguucggaacggGGAucgGGGGCa -3'
miRNA:   3'- -AGCACUCGCACu-UG-CGGC-------------UCU---UCCCG- -5'
25045 5' -55.1 NC_005336.1 + 43678 0.75 0.491289
Target:  5'- gUGUGuGCGUGGacGCGCCGAGGccgcgcguugcGGGCg -3'
miRNA:   3'- aGCACuCGCACU--UGCGGCUCUu----------CCCG- -5'
25045 5' -55.1 NC_005336.1 + 19567 0.73 0.580612
Target:  5'- aUCGUGGuGCGUGGGgGUgGGGGgagGGGGCc -3'
miRNA:   3'- -AGCACU-CGCACUUgCGgCUCU---UCCCG- -5'
25045 5' -55.1 NC_005336.1 + 104191 0.73 0.611274
Target:  5'- gCGUGGuGCGccUGAACGCCuuccucGAGcAGGGCg -3'
miRNA:   3'- aGCACU-CGC--ACUUGCGG------CUCuUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 74825 0.72 0.621536
Target:  5'- gCGUGGGCGUGAugGCgCGGcu-GGcGCg -3'
miRNA:   3'- aGCACUCGCACUugCG-GCUcuuCC-CG- -5'
25045 5' -55.1 NC_005336.1 + 121425 0.72 0.642077
Target:  5'- cUCGcGAGUGcgaGGAUcCCGAGGAGGGCu -3'
miRNA:   3'- -AGCaCUCGCa--CUUGcGGCUCUUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 61684 0.72 0.652339
Target:  5'- aUCGacGAGCGc-GACGUCGAGAAGGuGCu -3'
miRNA:   3'- -AGCa-CUCGCacUUGCGGCUCUUCC-CG- -5'
25045 5' -55.1 NC_005336.1 + 130068 0.72 0.652339
Target:  5'- gCGcGAGCGUGGACGCgCGAaauaacgcGGGCa -3'
miRNA:   3'- aGCaCUCGCACUUGCG-GCUcuu-----CCCG- -5'
25045 5' -55.1 NC_005336.1 + 110105 0.72 0.672807
Target:  5'- aCGUGcGCGUGGAacacgUGCCGc-GAGGGCa -3'
miRNA:   3'- aGCACuCGCACUU-----GCGGCucUUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 73741 0.71 0.682995
Target:  5'- cUCG-GAG-GU---CGCCGAGAAGGGCc -3'
miRNA:   3'- -AGCaCUCgCAcuuGCGGCUCUUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 67613 0.71 0.682995
Target:  5'- gCGUGAGCGgcguguucgUGAucggcgAgGCCGAGAgcagcaggaAGGGCa -3'
miRNA:   3'- aGCACUCGC---------ACU------UgCGGCUCU---------UCCCG- -5'
25045 5' -55.1 NC_005336.1 + 100939 0.71 0.693141
Target:  5'- aCGUGGGCGaGGACGCgGAGAGccGCc -3'
miRNA:   3'- aGCACUCGCaCUUGCGgCUCUUccCG- -5'
25045 5' -55.1 NC_005336.1 + 123339 0.71 0.71327
Target:  5'- gCGcGuGCGUGGGCGgCGAGAAcucgguaacGGGCu -3'
miRNA:   3'- aGCaCuCGCACUUGCgGCUCUU---------CCCG- -5'
25045 5' -55.1 NC_005336.1 + 118026 0.71 0.723234
Target:  5'- cCG-GuGCGUGAGCGCCGuuuacguGAAGGcGUu -3'
miRNA:   3'- aGCaCuCGCACUUGCGGCu------CUUCC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.