miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25045 5' -55.1 NC_005336.1 + 126988 0.68 0.842245
Target:  5'- aCGUgGAGCGcauGCGCCGgcugcuGGAcgAGGGCg -3'
miRNA:   3'- aGCA-CUCGCacuUGCGGC------UCU--UCCCG- -5'
25045 5' -55.1 NC_005336.1 + 43280 0.7 0.739988
Target:  5'- gUCGagGAGCGcgugcagcacuggaUGAGCGuguCCGAGAGcGGGCg -3'
miRNA:   3'- -AGCa-CUCGC--------------ACUUGC---GGCUCUU-CCCG- -5'
25045 5' -55.1 NC_005336.1 + 54975 0.7 0.742917
Target:  5'- aUCGUGAaguacuGCuccaUGAACGCCGAGGAGcaGGUc -3'
miRNA:   3'- -AGCACU------CGc---ACUUGCGGCUCUUC--CCG- -5'
25045 5' -55.1 NC_005336.1 + 75220 0.7 0.770745
Target:  5'- gCGgaaGAgcuGCGUGAACuGCCGGGAcuugucgcggaugAGGGCc -3'
miRNA:   3'- aGCa--CU---CGCACUUG-CGGCUCU-------------UCCCG- -5'
25045 5' -55.1 NC_005336.1 + 81378 0.7 0.775444
Target:  5'- gCGUGAgguucagcgagcaccGCGUGcAGCGCCGcGgcGGGUc -3'
miRNA:   3'- aGCACU---------------CGCAC-UUGCGGCuCuuCCCG- -5'
25045 5' -55.1 NC_005336.1 + 41080 0.7 0.781039
Target:  5'- gCGUGcacGCGcgccaGGAUGCUGuAGAAGGGCg -3'
miRNA:   3'- aGCACu--CGCa----CUUGCGGC-UCUUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 101746 0.69 0.799329
Target:  5'- cCGcGAGCGUGGACuuccucaaggaGCUGcuGGGGGCa -3'
miRNA:   3'- aGCaCUCGCACUUG-----------CGGCucUUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 61908 0.69 0.825602
Target:  5'- gUCGcGcGCGuUGAgcaGCGCCGGGAAGaGGUc -3'
miRNA:   3'- -AGCaCuCGC-ACU---UGCGGCUCUUC-CCG- -5'
25045 5' -55.1 NC_005336.1 + 83911 0.68 0.842245
Target:  5'- gUCGUGuagacGGCGgGcACGCCGGuGcGGGGCg -3'
miRNA:   3'- -AGCAC-----UCGCaCuUGCGGCU-CuUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 64378 0.7 0.73312
Target:  5'- cCGUGcGGCa-GAcCGCCGAGAcaguGGGGCa -3'
miRNA:   3'- aGCAC-UCGcaCUuGCGGCUCU----UCCCG- -5'
25045 5' -55.1 NC_005336.1 + 45485 0.71 0.723234
Target:  5'- ---cGAGgGUG-AUGCCGucGAAGGGCg -3'
miRNA:   3'- agcaCUCgCACuUGCGGCu-CUUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 118026 0.71 0.723234
Target:  5'- cCG-GuGCGUGAGCGCCGuuuacguGAAGGcGUu -3'
miRNA:   3'- aGCaCuCGCACUUGCGGCu------CUUCC-CG- -5'
25045 5' -55.1 NC_005336.1 + 14975 0.77 0.38335
Target:  5'- cCGUGcAGCGgcGAGCGCCGAGcgccGGGCc -3'
miRNA:   3'- aGCAC-UCGCa-CUUGCGGCUCuu--CCCG- -5'
25045 5' -55.1 NC_005336.1 + 43678 0.75 0.491289
Target:  5'- gUGUGuGCGUGGacGCGCCGAGGccgcgcguugcGGGCg -3'
miRNA:   3'- aGCACuCGCACU--UGCGGCUCUu----------CCCG- -5'
25045 5' -55.1 NC_005336.1 + 104191 0.73 0.611274
Target:  5'- gCGUGGuGCGccUGAACGCCuuccucGAGcAGGGCg -3'
miRNA:   3'- aGCACU-CGC--ACUUGCGG------CUCuUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 74825 0.72 0.621536
Target:  5'- gCGUGGGCGUGAugGCgCGGcu-GGcGCg -3'
miRNA:   3'- aGCACUCGCACUugCG-GCUcuuCC-CG- -5'
25045 5' -55.1 NC_005336.1 + 130068 0.72 0.652339
Target:  5'- gCGcGAGCGUGGACGCgCGAaauaacgcGGGCa -3'
miRNA:   3'- aGCaCUCGCACUUGCG-GCUcuu-----CCCG- -5'
25045 5' -55.1 NC_005336.1 + 110105 0.72 0.672807
Target:  5'- aCGUGcGCGUGGAacacgUGCCGc-GAGGGCa -3'
miRNA:   3'- aGCACuCGCACUU-----GCGGCucUUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 100939 0.71 0.693141
Target:  5'- aCGUGGGCGaGGACGCgGAGAGccGCc -3'
miRNA:   3'- aGCACUCGCaCUUGCGgCUCUUccCG- -5'
25045 5' -55.1 NC_005336.1 + 123339 0.71 0.71327
Target:  5'- gCGcGuGCGUGGGCGgCGAGAAcucgguaacGGGCu -3'
miRNA:   3'- aGCaCuCGCACUUGCgGCUCUU---------CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.