Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
252 | 5' | -59.1 | AC_000008.1 | + | 2175 | 0.66 | 0.371553 |
Target: 5'- aAGcCAGGCGGcGGCGGCaGgaGC-AGAGc -3' miRNA: 3'- -UC-GUCCGUCuCCGCCG-CgaCGcUUUC- -5' |
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252 | 5' | -59.1 | AC_000008.1 | + | 20666 | 0.66 | 0.362707 |
Target: 5'- cGCA-GCGGGGGCGGCaGCUuCGGc-- -3' miRNA: 3'- uCGUcCGUCUCCGCCG-CGAcGCUuuc -5' |
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252 | 5' | -59.1 | AC_000008.1 | + | 8530 | 0.66 | 0.354009 |
Target: 5'- cGCGcGGCGGGcGGUGG-GCcGCGggGGu -3' miRNA: 3'- uCGU-CCGUCU-CCGCCgCGaCGCuuUC- -5' |
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252 | 5' | -59.1 | AC_000008.1 | + | 10459 | 0.66 | 0.345459 |
Target: 5'- cGGC-GGCGGuGGUggaGGCGC-GCGGAAa -3' miRNA: 3'- -UCGuCCGUCuCCG---CCGCGaCGCUUUc -5' |
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252 | 5' | -59.1 | AC_000008.1 | + | 32079 | 0.66 | 0.342081 |
Target: 5'- cGCGGGCGGuGGCuGCaGCggcugaagcggcgGCGGAGGc -3' miRNA: 3'- uCGUCCGUCuCCGcCG-CGa------------CGCUUUC- -5' |
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252 | 5' | -59.1 | AC_000008.1 | + | 10779 | 0.66 | 0.337058 |
Target: 5'- -cCAGGCGc-GGCGGCuGCUGCGcuAGc -3' miRNA: 3'- ucGUCCGUcuCCGCCG-CGACGCuuUC- -5' |
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252 | 5' | -59.1 | AC_000008.1 | + | 24685 | 0.67 | 0.297306 |
Target: 5'- -cCAGGUAGugccGGGCccGGCGCcGCGggGGu -3' miRNA: 3'- ucGUCCGUC----UCCG--CCGCGaCGCuuUC- -5' |
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252 | 5' | -59.1 | AC_000008.1 | + | 5226 | 0.67 | 0.297306 |
Target: 5'- cGCGGGUuGGGGCGGCuuucGCUGUa---- -3' miRNA: 3'- uCGUCCGuCUCCGCCG----CGACGcuuuc -5' |
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252 | 5' | -59.1 | AC_000008.1 | + | 7697 | 0.68 | 0.282454 |
Target: 5'- gGGCGGGUgaAGAcGGUGGCGUUuacaggaugGCGAuAGg -3' miRNA: 3'- -UCGUCCG--UCU-CCGCCGCGA---------CGCUuUC- -5' |
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252 | 5' | -59.1 | AC_000008.1 | + | 6470 | 0.68 | 0.278115 |
Target: 5'- cGUAGGCgcucguugguccagcAGAGGCGGCcGCccuUGCGcGAGc -3' miRNA: 3'- uCGUCCG---------------UCUCCGCCG-CG---ACGCuUUC- -5' |
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252 | 5' | -59.1 | AC_000008.1 | + | 9694 | 0.68 | 0.268197 |
Target: 5'- cGUGGGUGGcGGCGGCaGCUGCa---- -3' miRNA: 3'- uCGUCCGUCuCCGCCG-CGACGcuuuc -5' |
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252 | 5' | -59.1 | AC_000008.1 | + | 32292 | 0.68 | 0.261289 |
Target: 5'- uGCucauGGCGGcGGCGGCuGCUGCa---- -3' miRNA: 3'- uCGu---CCGUCuCCGCCG-CGACGcuuuc -5' |
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252 | 5' | -59.1 | AC_000008.1 | + | 8634 | 0.69 | 0.235099 |
Target: 5'- gAGgGGGCAGGGGCacgucGGCGCcGCGn--- -3' miRNA: 3'- -UCgUCCGUCUCCG-----CCGCGaCGCuuuc -5' |
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252 | 5' | -59.1 | AC_000008.1 | + | 26801 | 0.7 | 0.184193 |
Target: 5'- cAGCAGGaGGAGGa-GCGCUGCGucuGGc -3' miRNA: 3'- -UCGUCCgUCUCCgcCGCGACGCuu-UC- -5' |
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252 | 5' | -59.1 | AC_000008.1 | + | 11795 | 0.72 | 0.147373 |
Target: 5'- cGGCAucGGUGGAGGCGGUGgUgGCGAAc- -3' miRNA: 3'- -UCGU--CCGUCUCCGCCGCgA-CGCUUuc -5' |
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252 | 5' | -59.1 | AC_000008.1 | + | 9464 | 0.72 | 0.143273 |
Target: 5'- -aCGGGCAGugccGGCGGCGCcugaggaGCGGAGGu -3' miRNA: 3'- ucGUCCGUCu---CCGCCGCGa------CGCUUUC- -5' |
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252 | 5' | -59.1 | AC_000008.1 | + | 8662 | 0.72 | 0.139277 |
Target: 5'- cGCGGGCAGGaGCuGGUGCUGCGc--- -3' miRNA: 3'- uCGUCCGUCUcCG-CCGCGACGCuuuc -5' |
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252 | 5' | -59.1 | AC_000008.1 | + | 15181 | 0.72 | 0.139277 |
Target: 5'- aAGCAuGGCcucaagcguGGAGGCGGUGUUGUGGGc- -3' miRNA: 3'- -UCGU-CCG---------UCUCCGCCGCGACGCUUuc -5' |
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252 | 5' | -59.1 | AC_000008.1 | + | 17260 | 0.72 | 0.127896 |
Target: 5'- cGguGGCGGAugccgcggugcaGGCGGuCGCUGCGGc-- -3' miRNA: 3'- uCguCCGUCU------------CCGCC-GCGACGCUuuc -5' |
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252 | 5' | -59.1 | AC_000008.1 | + | 12328 | 0.73 | 0.117381 |
Target: 5'- cGGCGGuGC--GGGCGGCGCUGC-AGAGc -3' miRNA: 3'- -UCGUC-CGucUCCGCCGCGACGcUUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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