Results 41 - 60 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25503 | 5' | -58.9 | NC_005337.1 | + | 133237 | 0.68 | 0.660924 |
Target: 5'- cCCGC-CGcCCGCCUCCCGcgcaaAGUgaaaUUCg -3' miRNA: 3'- aGGCGuGCuGGCGGAGGGC-----UCAa---GAG- -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 59738 | 0.68 | 0.660924 |
Target: 5'- gCCGCGCGGCggagcgCGUCUCCgCGAG--CUCg -3' miRNA: 3'- aGGCGUGCUG------GCGGAGG-GCUCaaGAG- -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 133237 | 0.68 | 0.660924 |
Target: 5'- cCCGC-CGcCCGCCUCCCGcgcaaAGUgaaaUUCg -3' miRNA: 3'- aGGCGuGCuGGCGGAGGGC-----UCAa---GAG- -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 131445 | 0.68 | 0.660924 |
Target: 5'- cUCCGCGgaGGCCGCgCUcggCCUGGGcUUCUCc -3' miRNA: 3'- -AGGCGUg-CUGGCG-GA---GGGCUC-AAGAG- -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 49727 | 0.68 | 0.654896 |
Target: 5'- gCCGCGCGuucguuuccacagccGCCGCgUCCuCGGGgacCUCg -3' miRNA: 3'- aGGCGUGC---------------UGGCGgAGG-GCUCaa-GAG- -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 10666 | 0.68 | 0.650874 |
Target: 5'- aCCGCGCGcCgGCCggcggCGGGUUCUCc -3' miRNA: 3'- aGGCGUGCuGgCGGagg--GCUCAAGAG- -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 120636 | 0.68 | 0.650874 |
Target: 5'- cCCGCGCGucCUGCUUCCagaCGAGgugCUCu -3' miRNA: 3'- aGGCGUGCu-GGCGGAGG---GCUCaa-GAG- -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 105285 | 0.68 | 0.650874 |
Target: 5'- cCUGgGCGGCCGCCgcugCCCGcAGUcgCUg -3' miRNA: 3'- aGGCgUGCUGGCGGa---GGGC-UCAa-GAg -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 127803 | 0.68 | 0.650874 |
Target: 5'- gUCCGCGCGcuggucACCGCCaCCaacuggGGGUUCUUc -3' miRNA: 3'- -AGGCGUGC------UGGCGGaGGg-----CUCAAGAG- -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 34258 | 0.68 | 0.650874 |
Target: 5'- cUCCaGCACGGuCCGCg--CCGGGUUCUUg -3' miRNA: 3'- -AGG-CGUGCU-GGCGgagGGCUCAAGAG- -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 100114 | 0.68 | 0.649869 |
Target: 5'- aCCGCGacgUGACCGCCUucCCCGccaacguGGUgCUCg -3' miRNA: 3'- aGGCGU---GCUGGCGGA--GGGC-------UCAaGAG- -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 94865 | 0.68 | 0.647856 |
Target: 5'- cCCGCGCGugUcgaacagcGCCUccggaaaccgcucgCCCGAGUUCa- -3' miRNA: 3'- aGGCGUGCugG--------CGGA--------------GGGCUCAAGag -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 76250 | 0.68 | 0.640811 |
Target: 5'- -gCGCACGGCCGUC-CCCGAaggUCg- -3' miRNA: 3'- agGCGUGCUGGCGGaGGGCUca-AGag -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 132996 | 0.68 | 0.640811 |
Target: 5'- cCCGC-CGAcCCGCCUCCgCGGGccaUCc -3' miRNA: 3'- aGGCGuGCU-GGCGGAGG-GCUCaagAG- -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 77045 | 0.68 | 0.630741 |
Target: 5'- -gUGCACGGCCucguuaGCCg-CCGAGUUUUCg -3' miRNA: 3'- agGCGUGCUGG------CGGagGGCUCAAGAG- -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 7347 | 0.68 | 0.630741 |
Target: 5'- gUCCGCGC--CCGCCUCCagcAGcgUCUCg -3' miRNA: 3'- -AGGCGUGcuGGCGGAGGgc-UCa-AGAG- -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 60036 | 0.69 | 0.620672 |
Target: 5'- cCCGCGCGGcgacCCGcCCUCCCGA--UCa- -3' miRNA: 3'- aGGCGUGCU----GGC-GGAGGGCUcaAGag -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 85668 | 0.69 | 0.610611 |
Target: 5'- uUCUGCACaGACaCGCUgcaUCCCaGGUUCUUg -3' miRNA: 3'- -AGGCGUG-CUG-GCGG---AGGGcUCAAGAG- -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 97190 | 0.69 | 0.604582 |
Target: 5'- uUCCGCACGcugcggugcaucuacACCuaCUUCCGAuUUCUCg -3' miRNA: 3'- -AGGCGUGC---------------UGGcgGAGGGCUcAAGAG- -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 64567 | 0.7 | 0.560678 |
Target: 5'- aCCGCGUGGCCGCCa-CCGAcagUCUCg -3' miRNA: 3'- aGGCGUGCUGGCGGagGGCUca-AGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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