miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25503 5' -58.9 NC_005337.1 + 38806 0.67 0.739807
Target:  5'- aCCGaCugGACgCGa-UCCaCGAGUUCUCc -3'
miRNA:   3'- aGGC-GugCUG-GCggAGG-GCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 68203 0.67 0.739807
Target:  5'- gCCGcCGCGGCCGCgUCCgCGAugcgGUcgCUCc -3'
miRNA:   3'- aGGC-GUGCUGGCGgAGG-GCU----CAa-GAG- -5'
25503 5' -58.9 NC_005337.1 + 133345 0.67 0.730173
Target:  5'- gUCCGCGCuccGCCGCCUCgCCGccgccgccGcgCUCg -3'
miRNA:   3'- -AGGCGUGc--UGGCGGAG-GGCu-------CaaGAG- -5'
25503 5' -58.9 NC_005337.1 + 133345 0.67 0.730173
Target:  5'- gUCCGCGCuccGCCGCCUCgCCGccgccgccGcgCUCg -3'
miRNA:   3'- -AGGCGUGc--UGGCGGAG-GGCu-------CaaGAG- -5'
25503 5' -58.9 NC_005337.1 + 100699 0.67 0.729205
Target:  5'- gCCGaCGCGacgcggcGCCGCgCUCUCGcAGUUCUUc -3'
miRNA:   3'- aGGC-GUGC-------UGGCG-GAGGGC-UCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 47836 0.67 0.720457
Target:  5'- cUCUGCgACGACCGUCUCUuccgCGAGUg--- -3'
miRNA:   3'- -AGGCG-UGCUGGCGGAGG----GCUCAagag -5'
25503 5' -58.9 NC_005337.1 + 86237 0.67 0.720457
Target:  5'- aUCCGCGCGucguUCGCCg-CCGuGUUCg- -3'
miRNA:   3'- -AGGCGUGCu---GGCGGagGGCuCAAGag -5'
25503 5' -58.9 NC_005337.1 + 66078 0.67 0.720457
Target:  5'- cCCGCAgCGG-CGCC-CCCGGGgccgcgCUCa -3'
miRNA:   3'- aGGCGU-GCUgGCGGaGGGCUCaa----GAG- -5'
25503 5' -58.9 NC_005337.1 + 46038 0.67 0.714591
Target:  5'- -aCGCACGAcgucuucgcagcagcCCGCCUCCuCGAGg---- -3'
miRNA:   3'- agGCGUGCU---------------GGCGGAGG-GCUCaagag -5'
25503 5' -58.9 NC_005337.1 + 45321 0.67 0.710667
Target:  5'- aCCGCGCccuCCGCCUCCgCGcGGUccgcgagCUCg -3'
miRNA:   3'- aGGCGUGcu-GGCGGAGG-GC-UCAa------GAG- -5'
25503 5' -58.9 NC_005337.1 + 13168 0.67 0.709685
Target:  5'- cUCCGCgggcgccGCGuCCGCCUCgCG-GUUCa- -3'
miRNA:   3'- -AGGCG-------UGCuGGCGGAGgGCuCAAGag -5'
25503 5' -58.9 NC_005337.1 + 124871 0.67 0.700813
Target:  5'- aUCGCAUG-CCGCCUacggccUCCGAGgacCUCg -3'
miRNA:   3'- aGGCGUGCuGGCGGA------GGGCUCaa-GAG- -5'
25503 5' -58.9 NC_005337.1 + 104909 0.67 0.690904
Target:  5'- gCCGCgACGGCCGCCg-UCGAGggCa- -3'
miRNA:   3'- aGGCG-UGCUGGCGGagGGCUCaaGag -5'
25503 5' -58.9 NC_005337.1 + 104752 0.68 0.680946
Target:  5'- gCCGCGCGAagaCCGCCgugCUgGAGaagCUCc -3'
miRNA:   3'- aGGCGUGCU---GGCGGa--GGgCUCaa-GAG- -5'
25503 5' -58.9 NC_005337.1 + 26116 0.68 0.680946
Target:  5'- aCCGCgGCGAucuCCGCCUCCagacGGUUgUCg -3'
miRNA:   3'- aGGCG-UGCU---GGCGGAGGgc--UCAAgAG- -5'
25503 5' -58.9 NC_005337.1 + 16693 0.68 0.680946
Target:  5'- cUCgCGCACGGCgGCCUCcgcugCCGGGUgacgCgUCa -3'
miRNA:   3'- -AG-GCGUGCUGgCGGAG-----GGCUCAa---G-AG- -5'
25503 5' -58.9 NC_005337.1 + 38366 0.68 0.680946
Target:  5'- -gCGCGCGGCCGCCgucgCCgCGAGc---- -3'
miRNA:   3'- agGCGUGCUGGCGGa---GG-GCUCaagag -5'
25503 5' -58.9 NC_005337.1 + 105795 0.68 0.679948
Target:  5'- gCCGCGCGGCCGCauccgugCUCCagGAG--CUCg -3'
miRNA:   3'- aGGCGUGCUGGCG-------GAGGg-CUCaaGAG- -5'
25503 5' -58.9 NC_005337.1 + 80671 0.68 0.664937
Target:  5'- aUCUGCGCGGCgCGCUUCCgcgcgcgcaugugcgCGAggaaGUUCUCc -3'
miRNA:   3'- -AGGCGUGCUG-GCGGAGG---------------GCU----CAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 133237 0.68 0.660924
Target:  5'- cCCGC-CGcCCGCCUCCCGcgcaaAGUgaaaUUCg -3'
miRNA:   3'- aGGCGuGCuGGCGGAGGGC-----UCAa---GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.