Results 21 - 40 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25503 | 5' | -58.9 | NC_005337.1 | + | 56294 | 0.73 | 0.378572 |
Target: 5'- gCCGUcauGCGGCCGCUgCUCGAGaUCUCg -3' miRNA: 3'- aGGCG---UGCUGGCGGaGGGCUCaAGAG- -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 9973 | 0.72 | 0.42046 |
Target: 5'- gCCGCGacgaGGCCGCgUCCUcggccacggcaGGGUUCUCg -3' miRNA: 3'- aGGCGUg---CUGGCGgAGGG-----------CUCAAGAG- -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 111722 | 0.72 | 0.428292 |
Target: 5'- aCCGCGCGuCCGCggugaaggucUUCCCGuccacgaAGUUCUCg -3' miRNA: 3'- aGGCGUGCuGGCG----------GAGGGC-------UCAAGAG- -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 98418 | 0.72 | 0.446898 |
Target: 5'- uUCCGCGCGuCCGCC-CCCGcAGcgCa- -3' miRNA: 3'- -AGGCGUGCuGGCGGaGGGC-UCaaGag -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 87799 | 0.71 | 0.483534 |
Target: 5'- --gGCGCGGCUGCUgCCCGGGagCUCg -3' miRNA: 3'- aggCGUGCUGGCGGaGGGCUCaaGAG- -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 92548 | 0.71 | 0.483534 |
Target: 5'- -gUGCGCGAgcUCGCCUCCUG-GUUCUUc -3' miRNA: 3'- agGCGUGCU--GGCGGAGGGCuCAAGAG- -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 46493 | 0.71 | 0.492919 |
Target: 5'- cCCGCGCGGCCGacaCCgcggcgCCgGAGUUCg- -3' miRNA: 3'- aGGCGUGCUGGC---GGa-----GGgCUCAAGag -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 50924 | 0.71 | 0.492919 |
Target: 5'- gUCCGCAgccaGuCgGCCUCCCGGGgcgcCUCg -3' miRNA: 3'- -AGGCGUg---CuGgCGGAGGGCUCaa--GAG- -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 60740 | 0.7 | 0.510974 |
Target: 5'- aCCGCGCGgauguacucgaguGCCGCCUCgCGGGUg--- -3' miRNA: 3'- aGGCGUGC-------------UGGCGGAGgGCUCAagag -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 47616 | 0.7 | 0.530271 |
Target: 5'- -gCGCGCGGCCGCgcugaaagccacgUUCCCGgAGUUCg- -3' miRNA: 3'- agGCGUGCUGGCG-------------GAGGGC-UCAAGag -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 69003 | 0.7 | 0.540997 |
Target: 5'- aUCCGCGCGAUCGCCgccgccgugUCCCGGa----- -3' miRNA: 3'- -AGGCGUGCUGGCGG---------AGGGCUcaagag -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 29181 | 0.7 | 0.540997 |
Target: 5'- gCCGCGCGACCGCagagguucagucCUCagaCGAGaacagcgUCUCg -3' miRNA: 3'- aGGCGUGCUGGCG------------GAGg--GCUCa------AGAG- -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 64567 | 0.7 | 0.560678 |
Target: 5'- aCCGCGUGGCCGCCa-CCGAcagUCUCg -3' miRNA: 3'- aGGCGUGCUGGCGGagGGCUca-AGAG- -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 103070 | 0.7 | 0.560678 |
Target: 5'- aUCCGCACGGCCGaCUUCgUGGag-CUCa -3' miRNA: 3'- -AGGCGUGCUGGC-GGAGgGCUcaaGAG- -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 115636 | 0.7 | 0.560678 |
Target: 5'- gCgGCGCGGCCGCCaUCgCCGAGg---- -3' miRNA: 3'- aGgCGUGCUGGCGG-AG-GGCUCaagag -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 97190 | 0.69 | 0.604582 |
Target: 5'- uUCCGCACGcugcggugcaucuacACCuaCUUCCGAuUUCUCg -3' miRNA: 3'- -AGGCGUGC---------------UGGcgGAGGGCUcAAGAG- -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 85668 | 0.69 | 0.610611 |
Target: 5'- uUCUGCACaGACaCGCUgcaUCCCaGGUUCUUg -3' miRNA: 3'- -AGGCGUG-CUG-GCGG---AGGGcUCAAGAG- -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 60036 | 0.69 | 0.620672 |
Target: 5'- cCCGCGCGGcgacCCGcCCUCCCGA--UCa- -3' miRNA: 3'- aGGCGUGCU----GGC-GGAGGGCUcaAGag -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 7347 | 0.68 | 0.630741 |
Target: 5'- gUCCGCGC--CCGCCUCCagcAGcgUCUCg -3' miRNA: 3'- -AGGCGUGcuGGCGGAGGgc-UCa-AGAG- -5' |
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25503 | 5' | -58.9 | NC_005337.1 | + | 77045 | 0.68 | 0.630741 |
Target: 5'- -gUGCACGGCCucguuaGCCg-CCGAGUUUUCg -3' miRNA: 3'- agGCGUGCUGG------CGGagGGCUCAAGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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