miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25503 5' -58.9 NC_005337.1 + 46493 0.71 0.492919
Target:  5'- cCCGCGCGGCCGacaCCgcggcgCCgGAGUUCg- -3'
miRNA:   3'- aGGCGUGCUGGC---GGa-----GGgCUCAAGag -5'
25503 5' -58.9 NC_005337.1 + 47616 0.7 0.530271
Target:  5'- -gCGCGCGGCCGCgcugaaagccacgUUCCCGgAGUUCg- -3'
miRNA:   3'- agGCGUGCUGGCG-------------GAGGGC-UCAAGag -5'
25503 5' -58.9 NC_005337.1 + 47836 0.67 0.720457
Target:  5'- cUCUGCgACGACCGUCUCUuccgCGAGUg--- -3'
miRNA:   3'- -AGGCG-UGCUGGCGGAGG----GCUCAagag -5'
25503 5' -58.9 NC_005337.1 + 49727 0.68 0.654896
Target:  5'- gCCGCGCGuucguuuccacagccGCCGCgUCCuCGGGgacCUCg -3'
miRNA:   3'- aGGCGUGC---------------UGGCGgAGG-GCUCaa-GAG- -5'
25503 5' -58.9 NC_005337.1 + 50924 0.71 0.492919
Target:  5'- gUCCGCAgccaGuCgGCCUCCCGGGgcgcCUCg -3'
miRNA:   3'- -AGGCGUg---CuGgCGGAGGGCUCaa--GAG- -5'
25503 5' -58.9 NC_005337.1 + 56294 0.73 0.378572
Target:  5'- gCCGUcauGCGGCCGCUgCUCGAGaUCUCg -3'
miRNA:   3'- aGGCG---UGCUGGCGGaGGGCUCaAGAG- -5'
25503 5' -58.9 NC_005337.1 + 58456 0.68 0.660924
Target:  5'- aCCGCAUGACCuCCg-CCGAcgUCUCg -3'
miRNA:   3'- aGGCGUGCUGGcGGagGGCUcaAGAG- -5'
25503 5' -58.9 NC_005337.1 + 59358 0.88 0.041867
Target:  5'- -gUGCGCGGCCGCCUCCgGAGUUCUUa -3'
miRNA:   3'- agGCGUGCUGGCGGAGGgCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 59738 0.68 0.660924
Target:  5'- gCCGCGCGGCggagcgCGUCUCCgCGAG--CUCg -3'
miRNA:   3'- aGGCGUGCUG------GCGGAGG-GCUCaaGAG- -5'
25503 5' -58.9 NC_005337.1 + 60036 0.69 0.620672
Target:  5'- cCCGCGCGGcgacCCGcCCUCCCGA--UCa- -3'
miRNA:   3'- aGGCGUGCU----GGC-GGAGGGCUcaAGag -5'
25503 5' -58.9 NC_005337.1 + 60444 0.75 0.303582
Target:  5'- cUCgCGCAUGACCGCCUCCgCGAcGUUg-- -3'
miRNA:   3'- -AG-GCGUGCUGGCGGAGG-GCU-CAAgag -5'
25503 5' -58.9 NC_005337.1 + 60740 0.7 0.510974
Target:  5'- aCCGCGCGgauguacucgaguGCCGCCUCgCGGGUg--- -3'
miRNA:   3'- aGGCGUGC-------------UGGCGGAGgGCUCAagag -5'
25503 5' -58.9 NC_005337.1 + 64567 0.7 0.560678
Target:  5'- aCCGCGUGGCCGCCa-CCGAcagUCUCg -3'
miRNA:   3'- aGGCGUGCUGGCGGagGGCUca-AGAG- -5'
25503 5' -58.9 NC_005337.1 + 66078 0.67 0.720457
Target:  5'- cCCGCAgCGG-CGCC-CCCGGGgccgcgCUCa -3'
miRNA:   3'- aGGCGU-GCUgGCGGaGGGCUCaa----GAG- -5'
25503 5' -58.9 NC_005337.1 + 67461 0.66 0.758793
Target:  5'- aUCCgGCGCagccGCCGCUUCgUCGAGggcgUCUCg -3'
miRNA:   3'- -AGG-CGUGc---UGGCGGAG-GGCUCa---AGAG- -5'
25503 5' -58.9 NC_005337.1 + 67680 0.66 0.768127
Target:  5'- cUCCGUcagccaccaGGCCGUCUCCUGGGcgucuaUCUCg -3'
miRNA:   3'- -AGGCGug-------CUGGCGGAGGGCUCa-----AGAG- -5'
25503 5' -58.9 NC_005337.1 + 68203 0.67 0.739807
Target:  5'- gCCGcCGCGGCCGCgUCCgCGAugcgGUcgCUCc -3'
miRNA:   3'- aGGC-GUGCUGGCGgAGG-GCU----CAa-GAG- -5'
25503 5' -58.9 NC_005337.1 + 68210 0.66 0.785533
Target:  5'- gCCGCuGCGGgcCCGCCUgacggcgUCCGGGUUC-Cg -3'
miRNA:   3'- aGGCG-UGCU--GGCGGA-------GGGCUCAAGaG- -5'
25503 5' -58.9 NC_005337.1 + 68421 0.66 0.786436
Target:  5'- -gCGCGCG-CCGCCgacgaCGAGUccgcUCUCg -3'
miRNA:   3'- agGCGUGCuGGCGGagg--GCUCA----AGAG- -5'
25503 5' -58.9 NC_005337.1 + 69003 0.7 0.540997
Target:  5'- aUCCGCGCGAUCGCCgccgccgugUCCCGGa----- -3'
miRNA:   3'- -AGGCGUGCUGGCGG---------AGGGCUcaagag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.