miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25503 5' -58.9 NC_005337.1 + 2657 0.66 0.768127
Target:  5'- -gCGC-CGGCCGCCUCCacgcuGAGUgcgCg -3'
miRNA:   3'- agGCGuGCUGGCGGAGGg----CUCAagaG- -5'
25503 5' -58.9 NC_005337.1 + 4107 0.66 0.795394
Target:  5'- cUCCGCGCGcACgGCCUCCgaaagcgcgCGAGcgC-Ca -3'
miRNA:   3'- -AGGCGUGC-UGgCGGAGG---------GCUCaaGaG- -5'
25503 5' -58.9 NC_005337.1 + 7347 0.68 0.630741
Target:  5'- gUCCGCGC--CCGCCUCCagcAGcgUCUCg -3'
miRNA:   3'- -AGGCGUGcuGGCGGAGGgc-UCa-AGAG- -5'
25503 5' -58.9 NC_005337.1 + 9973 0.72 0.42046
Target:  5'- gCCGCGacgaGGCCGCgUCCUcggccacggcaGGGUUCUCg -3'
miRNA:   3'- aGGCGUg---CUGGCGgAGGG-----------CUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 10666 0.68 0.650874
Target:  5'- aCCGCGCGcCgGCCggcggCGGGUUCUCc -3'
miRNA:   3'- aGGCGUGCuGgCGGagg--GCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 13168 0.67 0.709685
Target:  5'- cUCCGCgggcgccGCGuCCGCCUCgCG-GUUCa- -3'
miRNA:   3'- -AGGCG-------UGCuGGCGGAGgGCuCAAGag -5'
25503 5' -58.9 NC_005337.1 + 14421 0.66 0.786436
Target:  5'- gCCGCGCGacguGCCGCCgcuggCgCCGGGUa--- -3'
miRNA:   3'- aGGCGUGC----UGGCGGa----G-GGCUCAagag -5'
25503 5' -58.9 NC_005337.1 + 16693 0.68 0.680946
Target:  5'- cUCgCGCACGGCgGCCUCcgcugCCGGGUgacgCgUCa -3'
miRNA:   3'- -AG-GCGUGCUGgCGGAG-----GGCUCAa---G-AG- -5'
25503 5' -58.9 NC_005337.1 + 24903 0.66 0.786436
Target:  5'- cCCGCGCGugcCCGCCU-CCGuGUaCUg -3'
miRNA:   3'- aGGCGUGCu--GGCGGAgGGCuCAaGAg -5'
25503 5' -58.9 NC_005337.1 + 26116 0.68 0.680946
Target:  5'- aCCGCgGCGAucuCCGCCUCCagacGGUUgUCg -3'
miRNA:   3'- aGGCG-UGCU---GGCGGAGGgc--UCAAgAG- -5'
25503 5' -58.9 NC_005337.1 + 29181 0.7 0.540997
Target:  5'- gCCGCGCGACCGCagagguucagucCUCagaCGAGaacagcgUCUCg -3'
miRNA:   3'- aGGCGUGCUGGCG------------GAGg--GCUCa------AGAG- -5'
25503 5' -58.9 NC_005337.1 + 33994 0.66 0.758793
Target:  5'- -gCGCACgGACCGCCUCuuGcgcgcgcgguaGGUgCUCc -3'
miRNA:   3'- agGCGUG-CUGGCGGAGggC-----------UCAaGAG- -5'
25503 5' -58.9 NC_005337.1 + 34258 0.68 0.650874
Target:  5'- cUCCaGCACGGuCCGCg--CCGGGUUCUUg -3'
miRNA:   3'- -AGG-CGUGCU-GGCGgagGGCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 36483 0.66 0.786436
Target:  5'- gCCGCACGGCCuugGCCgcggCCgCG-GcgCUCg -3'
miRNA:   3'- aGGCGUGCUGG---CGGa---GG-GCuCaaGAG- -5'
25503 5' -58.9 NC_005337.1 + 38366 0.68 0.680946
Target:  5'- -gCGCGCGGCCGCCgucgCCgCGAGc---- -3'
miRNA:   3'- agGCGUGCUGGCGGa---GG-GCUCaagag -5'
25503 5' -58.9 NC_005337.1 + 38806 0.67 0.739807
Target:  5'- aCCGaCugGACgCGa-UCCaCGAGUUCUCc -3'
miRNA:   3'- aGGC-GugCUG-GCggAGG-GCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 43841 0.66 0.786436
Target:  5'- cUCCGCGCa--CGaCCUCCUGcAGUUCa- -3'
miRNA:   3'- -AGGCGUGcugGC-GGAGGGC-UCAAGag -5'
25503 5' -58.9 NC_005337.1 + 45321 0.67 0.710667
Target:  5'- aCCGCGCccuCCGCCUCCgCGcGGUccgcgagCUCg -3'
miRNA:   3'- aGGCGUGcu-GGCGGAGG-GC-UCAa------GAG- -5'
25503 5' -58.9 NC_005337.1 + 45504 0.66 0.786436
Target:  5'- -aCGCGCGGaccugCGCCUC-CGGGUcCUCg -3'
miRNA:   3'- agGCGUGCUg----GCGGAGgGCUCAaGAG- -5'
25503 5' -58.9 NC_005337.1 + 46038 0.67 0.714591
Target:  5'- -aCGCACGAcgucuucgcagcagcCCGCCUCCuCGAGg---- -3'
miRNA:   3'- agGCGUGCU---------------GGCGGAGG-GCUCaagag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.