miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25503 5' -58.9 NC_005337.1 + 94865 0.68 0.647856
Target:  5'- cCCGCGCGugUcgaacagcGCCUccggaaaccgcucgCCCGAGUUCa- -3'
miRNA:   3'- aGGCGUGCugG--------CGGA--------------GGGCUCAAGag -5'
25503 5' -58.9 NC_005337.1 + 98418 0.72 0.446898
Target:  5'- uUCCGCGCGuCCGCC-CCCGcAGcgCa- -3'
miRNA:   3'- -AGGCGUGCuGGCGGaGGGC-UCaaGag -5'
25503 5' -58.9 NC_005337.1 + 47616 0.7 0.530271
Target:  5'- -gCGCGCGGCCGCgcugaaagccacgUUCCCGgAGUUCg- -3'
miRNA:   3'- agGCGUGCUGGCG-------------GAGGGC-UCAAGag -5'
25503 5' -58.9 NC_005337.1 + 69003 0.7 0.540997
Target:  5'- aUCCGCGCGAUCGCCgccgccgugUCCCGGa----- -3'
miRNA:   3'- -AGGCGUGCUGGCGG---------AGGGCUcaagag -5'
25503 5' -58.9 NC_005337.1 + 115636 0.7 0.560678
Target:  5'- gCgGCGCGGCCGCCaUCgCCGAGg---- -3'
miRNA:   3'- aGgCGUGCUGGCGG-AG-GGCUCaagag -5'
25503 5' -58.9 NC_005337.1 + 64567 0.7 0.560678
Target:  5'- aCCGCGUGGCCGCCa-CCGAcagUCUCg -3'
miRNA:   3'- aGGCGUGCUGGCGGagGGCUca-AGAG- -5'
25503 5' -58.9 NC_005337.1 + 103070 0.7 0.560678
Target:  5'- aUCCGCACGGCCGaCUUCgUGGag-CUCa -3'
miRNA:   3'- -AGGCGUGCUGGC-GGAGgGCUcaaGAG- -5'
25503 5' -58.9 NC_005337.1 + 7347 0.68 0.630741
Target:  5'- gUCCGCGC--CCGCCUCCagcAGcgUCUCg -3'
miRNA:   3'- -AGGCGUGcuGGCGGAGGgc-UCa-AGAG- -5'
25503 5' -58.9 NC_005337.1 + 77045 0.68 0.630741
Target:  5'- -gUGCACGGCCucguuaGCCg-CCGAGUUUUCg -3'
miRNA:   3'- agGCGUGCUGG------CGGagGGCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 9973 0.72 0.42046
Target:  5'- gCCGCGacgaGGCCGCgUCCUcggccacggcaGGGUUCUCg -3'
miRNA:   3'- aGGCGUg---CUGGCGgAGGG-----------CUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 103523 0.73 0.378572
Target:  5'- uUCCGCACG-CUGCCgCCCGAGgagCg- -3'
miRNA:   3'- -AGGCGUGCuGGCGGaGGGCUCaa-Gag -5'
25503 5' -58.9 NC_005337.1 + 123605 0.74 0.35482
Target:  5'- gCCGCACGuGCCGCgCUCgCGGGUgcugacgCUCg -3'
miRNA:   3'- aGGCGUGC-UGGCG-GAGgGCUCAa------GAG- -5'
25503 5' -58.9 NC_005337.1 + 133915 1.1 0.001217
Target:  5'- gUCCGCACGACCGCCUCCCGAGUUCUCg -3'
miRNA:   3'- -AGGCGUGCUGGCGGAGGGCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 133976 1.1 0.001217
Target:  5'- gUCCGCACGACCGCCUCCCGAGUUCUCg -3'
miRNA:   3'- -AGGCGUGCUGGCGGAGGGCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 134037 1.1 0.001217
Target:  5'- gUCCGCACGACCGCCUCCCGAGUUCUCg -3'
miRNA:   3'- -AGGCGUGCUGGCGGAGGGCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 134098 1.1 0.001217
Target:  5'- gUCCGCACGACCGCCUCCCGAGUUCUCg -3'
miRNA:   3'- -AGGCGUGCUGGCGGAGGGCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 134159 1.1 0.001217
Target:  5'- gUCCGCACGACCGCCUCCCGAGUUCUCg -3'
miRNA:   3'- -AGGCGUGCUGGCGGAGGGCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 134212 1.1 0.001217
Target:  5'- gUCCGCACGACCGCCUCCCGAGUUCUCg -3'
miRNA:   3'- -AGGCGUGCUGGCGGAGGGCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 134273 1 0.006274
Target:  5'- gUCCGCACGACCGCCUCCCGAGUUC-- -3'
miRNA:   3'- -AGGCGUGCUGGCGGAGGGCUCAAGag -5'
25503 5' -58.9 NC_005337.1 + 59358 0.88 0.041867
Target:  5'- -gUGCGCGGCCGCCUCCgGAGUUCUUa -3'
miRNA:   3'- agGCGUGCUGGCGGAGGgCUCAAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.