miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25503 5' -58.9 NC_005337.1 + 133854 1.1 0.001217
Target:  5'- gUCCGCACGACCGCCUCCCGAGUUCUCg -3'
miRNA:   3'- -AGGCGUGCUGGCGGAGGGCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 97190 0.69 0.604582
Target:  5'- uUCCGCACGcugcggugcaucuacACCuaCUUCCGAuUUCUCg -3'
miRNA:   3'- -AGGCGUGC---------------UGGcgGAGGGCUcAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 60036 0.69 0.620672
Target:  5'- cCCGCGCGGcgacCCGcCCUCCCGA--UCa- -3'
miRNA:   3'- aGGCGUGCU----GGC-GGAGGGCUcaAGag -5'
25503 5' -58.9 NC_005337.1 + 4107 0.66 0.795394
Target:  5'- cUCCGCGCGcACgGCCUCCgaaagcgcgCGAGcgC-Ca -3'
miRNA:   3'- -AGGCGUGC-UGgCGGAGG---------GCUCaaGaG- -5'
25503 5' -58.9 NC_005337.1 + 134098 1.1 0.001217
Target:  5'- gUCCGCACGACCGCCUCCCGAGUUCUCg -3'
miRNA:   3'- -AGGCGUGCUGGCGGAGGGCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 134159 1.1 0.001217
Target:  5'- gUCCGCACGACCGCCUCCCGAGUUCUCg -3'
miRNA:   3'- -AGGCGUGCUGGCGGAGGGCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 134273 1 0.006274
Target:  5'- gUCCGCACGACCGCCUCCCGAGUUC-- -3'
miRNA:   3'- -AGGCGUGCUGGCGGAGGGCUCAAGag -5'
25503 5' -58.9 NC_005337.1 + 60444 0.75 0.303582
Target:  5'- cUCgCGCAUGACCGCCUCCgCGAcGUUg-- -3'
miRNA:   3'- -AG-GCGUGCUGGCGGAGG-GCU-CAAgag -5'
25503 5' -58.9 NC_005337.1 + 87799 0.71 0.483534
Target:  5'- --gGCGCGGCUGCUgCCCGGGagCUCg -3'
miRNA:   3'- aggCGUGCUGGCGGaGGGCUCaaGAG- -5'
25503 5' -58.9 NC_005337.1 + 29181 0.7 0.540997
Target:  5'- gCCGCGCGACCGCagagguucagucCUCagaCGAGaacagcgUCUCg -3'
miRNA:   3'- aGGCGUGCUGGCG------------GAGg--GCUCa------AGAG- -5'
25503 5' -58.9 NC_005337.1 + 50924 0.71 0.492919
Target:  5'- gUCCGCAgccaGuCgGCCUCCCGGGgcgcCUCg -3'
miRNA:   3'- -AGGCGUg---CuGgCGGAGGGCUCaa--GAG- -5'
25503 5' -58.9 NC_005337.1 + 111722 0.72 0.428292
Target:  5'- aCCGCGCGuCCGCggugaaggucUUCCCGuccacgaAGUUCUCg -3'
miRNA:   3'- aGGCGUGCuGGCG----------GAGGGC-------UCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 133915 1.1 0.001217
Target:  5'- gUCCGCACGACCGCCUCCCGAGUUCUCg -3'
miRNA:   3'- -AGGCGUGCUGGCGGAGGGCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 46493 0.71 0.492919
Target:  5'- cCCGCGCGGCCGacaCCgcggcgCCgGAGUUCg- -3'
miRNA:   3'- aGGCGUGCUGGC---GGa-----GGgCUCAAGag -5'
25503 5' -58.9 NC_005337.1 + 133976 1.1 0.001217
Target:  5'- gUCCGCACGACCGCCUCCCGAGUUCUCg -3'
miRNA:   3'- -AGGCGUGCUGGCGGAGGGCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 56294 0.73 0.378572
Target:  5'- gCCGUcauGCGGCCGCUgCUCGAGaUCUCg -3'
miRNA:   3'- aGGCG---UGCUGGCGGaGGGCUCaAGAG- -5'
25503 5' -58.9 NC_005337.1 + 60740 0.7 0.510974
Target:  5'- aCCGCGCGgauguacucgaguGCCGCCUCgCGGGUg--- -3'
miRNA:   3'- aGGCGUGC-------------UGGCGGAGgGCUCAagag -5'
25503 5' -58.9 NC_005337.1 + 85668 0.69 0.610611
Target:  5'- uUCUGCACaGACaCGCUgcaUCCCaGGUUCUUg -3'
miRNA:   3'- -AGGCGUG-CUG-GCGG---AGGGcUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 134037 1.1 0.001217
Target:  5'- gUCCGCACGACCGCCUCCCGAGUUCUCg -3'
miRNA:   3'- -AGGCGUGCUGGCGGAGGGCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 134212 1.1 0.001217
Target:  5'- gUCCGCACGACCGCCUCCCGAGUUCUCg -3'
miRNA:   3'- -AGGCGUGCUGGCGGAGGGCUCAAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.