miRNA display CGI


Results 1 - 20 of 94 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25503 5' -58.9 NC_005337.1 + 134273 1 0.006274
Target:  5'- gUCCGCACGACCGCCUCCCGAGUUC-- -3'
miRNA:   3'- -AGGCGUGCUGGCGGAGGGCUCAAGag -5'
25503 5' -58.9 NC_005337.1 + 134273 1 0.006274
Target:  5'- gUCCGCACGACCGCCUCCCGAGUUC-- -3'
miRNA:   3'- -AGGCGUGCUGGCGGAGGGCUCAAGag -5'
25503 5' -58.9 NC_005337.1 + 134212 1.1 0.001217
Target:  5'- gUCCGCACGACCGCCUCCCGAGUUCUCg -3'
miRNA:   3'- -AGGCGUGCUGGCGGAGGGCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 134212 1.1 0.001217
Target:  5'- gUCCGCACGACCGCCUCCCGAGUUCUCg -3'
miRNA:   3'- -AGGCGUGCUGGCGGAGGGCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 134159 1.1 0.001217
Target:  5'- gUCCGCACGACCGCCUCCCGAGUUCUCg -3'
miRNA:   3'- -AGGCGUGCUGGCGGAGGGCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 134159 1.1 0.001217
Target:  5'- gUCCGCACGACCGCCUCCCGAGUUCUCg -3'
miRNA:   3'- -AGGCGUGCUGGCGGAGGGCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 134098 1.1 0.001217
Target:  5'- gUCCGCACGACCGCCUCCCGAGUUCUCg -3'
miRNA:   3'- -AGGCGUGCUGGCGGAGGGCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 134098 1.1 0.001217
Target:  5'- gUCCGCACGACCGCCUCCCGAGUUCUCg -3'
miRNA:   3'- -AGGCGUGCUGGCGGAGGGCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 134037 1.1 0.001217
Target:  5'- gUCCGCACGACCGCCUCCCGAGUUCUCg -3'
miRNA:   3'- -AGGCGUGCUGGCGGAGGGCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 134037 1.1 0.001217
Target:  5'- gUCCGCACGACCGCCUCCCGAGUUCUCg -3'
miRNA:   3'- -AGGCGUGCUGGCGGAGGGCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 133976 1.1 0.001217
Target:  5'- gUCCGCACGACCGCCUCCCGAGUUCUCg -3'
miRNA:   3'- -AGGCGUGCUGGCGGAGGGCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 133976 1.1 0.001217
Target:  5'- gUCCGCACGACCGCCUCCCGAGUUCUCg -3'
miRNA:   3'- -AGGCGUGCUGGCGGAGGGCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 133915 1.1 0.001217
Target:  5'- gUCCGCACGACCGCCUCCCGAGUUCUCg -3'
miRNA:   3'- -AGGCGUGCUGGCGGAGGGCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 133915 1.1 0.001217
Target:  5'- gUCCGCACGACCGCCUCCCGAGUUCUCg -3'
miRNA:   3'- -AGGCGUGCUGGCGGAGGGCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 133854 1.1 0.001217
Target:  5'- gUCCGCACGACCGCCUCCCGAGUUCUCg -3'
miRNA:   3'- -AGGCGUGCUGGCGGAGGGCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 133854 1.1 0.001217
Target:  5'- gUCCGCACGACCGCCUCCCGAGUUCUCg -3'
miRNA:   3'- -AGGCGUGCUGGCGGAGGGCUCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 133345 0.67 0.730173
Target:  5'- gUCCGCGCuccGCCGCCUCgCCGccgccgccGcgCUCg -3'
miRNA:   3'- -AGGCGUGc--UGGCGGAG-GGCu-------CaaGAG- -5'
25503 5' -58.9 NC_005337.1 + 133345 0.67 0.730173
Target:  5'- gUCCGCGCuccGCCGCCUCgCCGccgccgccGcgCUCg -3'
miRNA:   3'- -AGGCGUGc--UGGCGGAG-GGCu-------CaaGAG- -5'
25503 5' -58.9 NC_005337.1 + 133237 0.68 0.660924
Target:  5'- cCCGC-CGcCCGCCUCCCGcgcaaAGUgaaaUUCg -3'
miRNA:   3'- aGGCGuGCuGGCGGAGGGC-----UCAa---GAG- -5'
25503 5' -58.9 NC_005337.1 + 133237 0.68 0.660924
Target:  5'- cCCGC-CGcCCGCCUCCCGcgcaaAGUgaaaUUCg -3'
miRNA:   3'- aGGCGuGCuGGCGGAGGGC-----UCAa---GAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.