miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25504 3' -55 NC_005337.1 + 47856 0.66 0.916289
Target:  5'- aCCgaGGACGccauccACAUCGcgccggaCGCGCGCAGc -3'
miRNA:   3'- gGGgaCCUGU------UGUAGCa------GCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 52008 0.67 0.890841
Target:  5'- aCgCCgugacGGACGGCcgCG-CGCGCGCGGu -3'
miRNA:   3'- -GgGGa----CCUGUUGuaGCaGCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 52536 0.65 0.927546
Target:  5'- aUgCUGGACGggaGCGUCaUCGUGUACAu -3'
miRNA:   3'- gGgGACCUGU---UGUAGcAGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 54002 0.68 0.845736
Target:  5'- -gCC-GGAUcACcgCGUCGCGCACGc -3'
miRNA:   3'- ggGGaCCUGuUGuaGCAGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 55150 0.66 0.897564
Target:  5'- aUCCaGGACAccgACGUCuUCGUGCGCGu -3'
miRNA:   3'- gGGGaCCUGU---UGUAGcAGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 56803 0.8 0.244763
Target:  5'- gCCCCgGGAC-GCGUCGcCGCGCACGc -3'
miRNA:   3'- -GGGGaCCUGuUGUAGCaGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 58791 0.66 0.913919
Target:  5'- aUCCUGGACAugaccuggaacgagGCcucgcugcgccagAUCGUCGgGCGCGc -3'
miRNA:   3'- gGGGACCUGU--------------UG-------------UAGCAGCgCGUGUu -5'
25504 3' -55 NC_005337.1 + 58851 0.67 0.876693
Target:  5'- -aCCUGGACuuCGcgCGcUCGCGCGCc- -3'
miRNA:   3'- ggGGACCUGuuGUa-GC-AGCGCGUGuu -5'
25504 3' -55 NC_005337.1 + 59650 0.66 0.910291
Target:  5'- gCCCCgccggGGaACAucACGUCGUCGCGg---- -3'
miRNA:   3'- -GGGGa----CC-UGU--UGUAGCAGCGCguguu -5'
25504 3' -55 NC_005337.1 + 62419 0.66 0.910291
Target:  5'- gCCCgUGG----CGUCGUCGUGCACc- -3'
miRNA:   3'- -GGGgACCuguuGUAGCAGCGCGUGuu -5'
25504 3' -55 NC_005337.1 + 62533 0.71 0.69533
Target:  5'- gCCCaccGACAggcugaccgucGCGUCGUCGCGCACc- -3'
miRNA:   3'- gGGGac-CUGU-----------UGUAGCAGCGCGUGuu -5'
25504 3' -55 NC_005337.1 + 63405 0.67 0.883882
Target:  5'- gCgCUGGACAugGcgcgcUCGUacaGCGCGCGGu -3'
miRNA:   3'- gGgGACCUGUugU-----AGCAg--CGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 64188 0.72 0.591643
Target:  5'- uUCgUGGGCAaggACAggGUCGCGCACGAg -3'
miRNA:   3'- gGGgACCUGU---UGUagCAGCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 66302 0.67 0.883882
Target:  5'- aCCCUGGACcGCGUgagCGcCGCGguCGc -3'
miRNA:   3'- gGGGACCUGuUGUA---GCaGCGCguGUu -5'
25504 3' -55 NC_005337.1 + 67627 0.7 0.735776
Target:  5'- gUCCaucacGGACAGCAgcUgGUCGCGCGCGu -3'
miRNA:   3'- -GGGga---CCUGUUGU--AgCAGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 68866 0.7 0.72578
Target:  5'- gCCCCgcgccGGAgAACAUCuUCGCGCAg-- -3'
miRNA:   3'- -GGGGa----CCUgUUGUAGcAGCGCGUguu -5'
25504 3' -55 NC_005337.1 + 68955 0.66 0.897564
Target:  5'- aCgCgGGACAGCGgcaugCG-CGCGCGCAGc -3'
miRNA:   3'- gGgGaCCUGUUGUa----GCaGCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 72402 0.69 0.77473
Target:  5'- cCCCCggGGugGcGCGaCGUCGUGCACu- -3'
miRNA:   3'- -GGGGa-CCugU-UGUaGCAGCGCGUGuu -5'
25504 3' -55 NC_005337.1 + 73988 0.72 0.633201
Target:  5'- aCCgCgUGGGCGACGUCGUC-CGCGgGAc -3'
miRNA:   3'- -GG-GgACCUGUUGUAGCAGcGCGUgUU- -5'
25504 3' -55 NC_005337.1 + 79101 0.67 0.869278
Target:  5'- gCCCaccGGC-ACGUCGUCGaCGCGCAc -3'
miRNA:   3'- gGGGac-CUGuUGUAGCAGC-GCGUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.