miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25504 3' -55 NC_005337.1 + 5861 0.7 0.735776
Target:  5'- cCCCCUGGugGGgAgCGUgGCGUugGGg -3'
miRNA:   3'- -GGGGACCugUUgUaGCAgCGCGugUU- -5'
25504 3' -55 NC_005337.1 + 7464 0.66 0.916289
Target:  5'- gUCCgUGG-CGACGagGgCGCGCACGAc -3'
miRNA:   3'- -GGGgACCuGUUGUagCaGCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 16952 0.67 0.869278
Target:  5'- gCCCUGGAgAACccgaCG-CGUGCGCGGa -3'
miRNA:   3'- gGGGACCUgUUGua--GCaGCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 18580 0.67 0.861643
Target:  5'- aCCUUGuuGACGGCGUUGUCcgacuuguGCGCGCGGa -3'
miRNA:   3'- gGGGAC--CUGUUGUAGCAG--------CGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 19787 0.68 0.811578
Target:  5'- gCCgCUGGACucgGCGUCGUCGUaGgGCGGu -3'
miRNA:   3'- -GGgGACCUGu--UGUAGCAGCG-CgUGUU- -5'
25504 3' -55 NC_005337.1 + 24306 0.67 0.883882
Target:  5'- cUCgUUGGACAcgcgggACAUCGUCGacggcaGCACGGa -3'
miRNA:   3'- -GGgGACCUGU------UGUAGCAGCg-----CGUGUU- -5'
25504 3' -55 NC_005337.1 + 25184 0.71 0.685058
Target:  5'- gCCCUGGccucggccGCGGCcauguUCGUCGCGCuGCAGa -3'
miRNA:   3'- gGGGACC--------UGUUGu----AGCAGCGCG-UGUU- -5'
25504 3' -55 NC_005337.1 + 25681 0.66 0.910291
Target:  5'- gCCCUcGAaGGCggCGUCGCGCAgGAg -3'
miRNA:   3'- gGGGAcCUgUUGuaGCAGCGCGUgUU- -5'
25504 3' -55 NC_005337.1 + 26697 0.66 0.904048
Target:  5'- gCCCgUGGACAGCA----CGCGgGCGAa -3'
miRNA:   3'- -GGGgACCUGUUGUagcaGCGCgUGUU- -5'
25504 3' -55 NC_005337.1 + 28294 0.68 0.829027
Target:  5'- aCCCCacgccGGugAccuCcUCGUCGCGCGCGu -3'
miRNA:   3'- -GGGGa----CCugUu--GuAGCAGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 29366 0.67 0.883882
Target:  5'- gCCCUcGACGGCGgcCGUCGCgGCGCu- -3'
miRNA:   3'- gGGGAcCUGUUGUa-GCAGCG-CGUGuu -5'
25504 3' -55 NC_005337.1 + 30073 0.72 0.622793
Target:  5'- uCCCCgaGGAUGGCGcggCGcUCGCGCACGGu -3'
miRNA:   3'- -GGGGa-CCUGUUGUa--GC-AGCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 30357 0.72 0.609274
Target:  5'- gCCCCgcGGACAggagcacgcggagcACGUCcauGUCGCGCGCGg -3'
miRNA:   3'- -GGGGa-CCUGU--------------UGUAG---CAGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 30752 0.65 0.927546
Target:  5'- gCUCCUcGGGCGGCAgcgugCGgaagCGCuGCACGGa -3'
miRNA:   3'- -GGGGA-CCUGUUGUa----GCa---GCG-CGUGUU- -5'
25504 3' -55 NC_005337.1 + 39014 0.69 0.77473
Target:  5'- -aCCUGGGCccgcGCGUCugccgCGCGCACGAg -3'
miRNA:   3'- ggGGACCUGu---UGUAGca---GCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 39081 0.69 0.802596
Target:  5'- aCCagaUGGGCGACAUCGuggUCGCcgugGCGCGGa -3'
miRNA:   3'- gGGg--ACCUGUUGUAGC---AGCG----CGUGUU- -5'
25504 3' -55 NC_005337.1 + 39435 0.65 0.927546
Target:  5'- gCCCgCUcGGGCcGCGcUCGgUGCGCACGAu -3'
miRNA:   3'- -GGG-GA-CCUGuUGU-AGCaGCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 46019 0.68 0.811578
Target:  5'- aCCggCUGaaacauGGCGACGUCGUCGCGCAa-- -3'
miRNA:   3'- gGG--GAC------CUGUUGUAGCAGCGCGUguu -5'
25504 3' -55 NC_005337.1 + 46320 0.66 0.916289
Target:  5'- cCUCCaGGAgGACAUCaUCGUGUACu- -3'
miRNA:   3'- -GGGGaCCUgUUGUAGcAGCGCGUGuu -5'
25504 3' -55 NC_005337.1 + 47592 0.69 0.802596
Target:  5'- gCCgCUGGGCGugGgcgaCGcCGCGCGCGc -3'
miRNA:   3'- -GGgGACCUGUugUa---GCaGCGCGUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.