miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25504 3' -55 NC_005337.1 + 18580 0.67 0.861643
Target:  5'- aCCUUGuuGACGGCGUUGUCcgacuuguGCGCGCGGa -3'
miRNA:   3'- gGGGAC--CUGUUGUAGCAG--------CGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 39081 0.69 0.802596
Target:  5'- aCCagaUGGGCGACAUCGuggUCGCcgugGCGCGGa -3'
miRNA:   3'- gGGg--ACCUGUUGUAGC---AGCG----CGUGUU- -5'
25504 3' -55 NC_005337.1 + 86241 0.69 0.802596
Target:  5'- gCgUUGGGCAcCGUCGcgUUGCGCACGAa -3'
miRNA:   3'- gGgGACCUGUuGUAGC--AGCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 109767 0.69 0.802596
Target:  5'- -gCUUGGGCAcgggccgagcGCGUCGcCGCGCACc- -3'
miRNA:   3'- ggGGACCUGU----------UGUAGCaGCGCGUGuu -5'
25504 3' -55 NC_005337.1 + 90389 0.68 0.811578
Target:  5'- gCCgUGGuACGuguGCG-CGUCGCGCACGu -3'
miRNA:   3'- gGGgACC-UGU---UGUaGCAGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 83659 0.68 0.820391
Target:  5'- -aCCUGGACAGCAgccggcgcaggUCGUCGauCGCGGu -3'
miRNA:   3'- ggGGACCUGUUGU-----------AGCAGCgcGUGUU- -5'
25504 3' -55 NC_005337.1 + 28294 0.68 0.829027
Target:  5'- aCCCCacgccGGugAccuCcUCGUCGCGCGCGu -3'
miRNA:   3'- -GGGGa----CCugUu--GuAGCAGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 54002 0.68 0.845736
Target:  5'- -gCC-GGAUcACcgCGUCGCGCACGc -3'
miRNA:   3'- ggGGaCCUGuUGuaGCAGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 122533 0.68 0.853793
Target:  5'- gCCCUGGcGCGGCGaCG-CGCGCuGCAGc -3'
miRNA:   3'- gGGGACC-UGUUGUaGCaGCGCG-UGUU- -5'
25504 3' -55 NC_005337.1 + 47592 0.69 0.802596
Target:  5'- gCCgCUGGGCGugGgcgaCGcCGCGCGCGc -3'
miRNA:   3'- -GGgGACCUGUugUa---GCaGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 115042 0.7 0.755478
Target:  5'- gCCCCUgccaGGGCAugGcCGUCGUGCuCAGc -3'
miRNA:   3'- -GGGGA----CCUGUugUaGCAGCGCGuGUU- -5'
25504 3' -55 NC_005337.1 + 96927 0.7 0.754503
Target:  5'- aCCCCaaccagaagaucgUGGugGACGaggugcUCGcCGCGCGCGAc -3'
miRNA:   3'- -GGGG-------------ACCugUUGU------AGCaGCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 105283 0.74 0.487873
Target:  5'- aCCCUGGGCGGCcgccgcugcccgcaGUCGcUGCGCACGc -3'
miRNA:   3'- gGGGACCUGUUG--------------UAGCaGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 64188 0.72 0.591643
Target:  5'- uUCgUGGGCAaggACAggGUCGCGCACGAg -3'
miRNA:   3'- gGGgACCUGU---UGUagCAGCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 130574 0.72 0.602006
Target:  5'- cCCCCUggcgccgaGGACAagaaGCcgCGUCGgGCGCGAc -3'
miRNA:   3'- -GGGGA--------CCUGU----UGuaGCAGCgCGUGUU- -5'
25504 3' -55 NC_005337.1 + 30357 0.72 0.609274
Target:  5'- gCCCCgcGGACAggagcacgcggagcACGUCcauGUCGCGCGCGg -3'
miRNA:   3'- -GGGGa-CCUGU--------------UGUAG---CAGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 73988 0.72 0.633201
Target:  5'- aCCgCgUGGGCGACGUCGUC-CGCGgGAc -3'
miRNA:   3'- -GG-GgACCUGUUGUAGCAGcGCGUgUU- -5'
25504 3' -55 NC_005337.1 + 62533 0.71 0.69533
Target:  5'- gCCCaccGACAggcugaccgucGCGUCGUCGCGCACc- -3'
miRNA:   3'- gGGGac-CUGU-----------UGUAGCAGCGCGUGuu -5'
25504 3' -55 NC_005337.1 + 68866 0.7 0.72578
Target:  5'- gCCCCgcgccGGAgAACAUCuUCGCGCAg-- -3'
miRNA:   3'- -GGGGa----CCUgUUGUAGcAGCGCGUguu -5'
25504 3' -55 NC_005337.1 + 5861 0.7 0.735776
Target:  5'- cCCCCUGGugGGgAgCGUgGCGUugGGg -3'
miRNA:   3'- -GGGGACCugUUgUaGCAgCGCGugUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.