miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25504 3' -55 NC_005337.1 + 132684 1.08 0.003798
Target:  5'- gCCCCUGGACAACAUCGUCGCGCACAAc -3'
miRNA:   3'- -GGGGACCUGUUGUAGCAGCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 56803 0.8 0.244763
Target:  5'- gCCCCgGGAC-GCGUCGcCGCGCACGc -3'
miRNA:   3'- -GGGGaCCUGuUGUAGCaGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 110333 0.75 0.434196
Target:  5'- gCCCggccGGGCGGCGUCG-CGCGCGCc- -3'
miRNA:   3'- gGGGa---CCUGUUGUAGCaGCGCGUGuu -5'
25504 3' -55 NC_005337.1 + 105283 0.74 0.487873
Target:  5'- aCCCUGGGCGGCcgccgcugcccgcaGUCGcUGCGCACGc -3'
miRNA:   3'- gGGGACCUGUUG--------------UAGCaGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 126791 0.74 0.530349
Target:  5'- gCCCCgUGGACcugGACGUCGU-GCGCGCc- -3'
miRNA:   3'- -GGGG-ACCUG---UUGUAGCAgCGCGUGuu -5'
25504 3' -55 NC_005337.1 + 64188 0.72 0.591643
Target:  5'- uUCgUGGGCAaggACAggGUCGCGCACGAg -3'
miRNA:   3'- gGGgACCUGU---UGUagCAGCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 130574 0.72 0.602006
Target:  5'- cCCCCUggcgccgaGGACAagaaGCcgCGUCGgGCGCGAc -3'
miRNA:   3'- -GGGGA--------CCUGU----UGuaGCAGCgCGUGUU- -5'
25504 3' -55 NC_005337.1 + 30357 0.72 0.609274
Target:  5'- gCCCCgcGGACAggagcacgcggagcACGUCcauGUCGCGCGCGg -3'
miRNA:   3'- -GGGGa-CCUGU--------------UGUAG---CAGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 30073 0.72 0.622793
Target:  5'- uCCCCgaGGAUGGCGcggCGcUCGCGCACGGu -3'
miRNA:   3'- -GGGGa-CCUGUUGUa--GC-AGCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 73988 0.72 0.633201
Target:  5'- aCCgCgUGGGCGACGUCGUC-CGCGgGAc -3'
miRNA:   3'- -GG-GgACCUGUUGUAGCAGcGCGUgUU- -5'
25504 3' -55 NC_005337.1 + 103115 0.71 0.664387
Target:  5'- cCUCCcGGaguGCGGCAUCGUgCGCGCGCu- -3'
miRNA:   3'- -GGGGaCC---UGUUGUAGCA-GCGCGUGuu -5'
25504 3' -55 NC_005337.1 + 25184 0.71 0.685058
Target:  5'- gCCCUGGccucggccGCGGCcauguUCGUCGCGCuGCAGa -3'
miRNA:   3'- gGGGACC--------UGUUGu----AGCAGCGCG-UGUU- -5'
25504 3' -55 NC_005337.1 + 62533 0.71 0.69533
Target:  5'- gCCCaccGACAggcugaccgucGCGUCGUCGCGCACc- -3'
miRNA:   3'- gGGGac-CUGU-----------UGUAGCAGCGCGUGuu -5'
25504 3' -55 NC_005337.1 + 124424 0.7 0.705547
Target:  5'- gUCCUGGGCAACGcCG-CGCGCGgGu -3'
miRNA:   3'- gGGGACCUGUUGUaGCaGCGCGUgUu -5'
25504 3' -55 NC_005337.1 + 122987 0.7 0.715701
Target:  5'- aUCgUGGACGACAcCuUCGCGCACGu -3'
miRNA:   3'- gGGgACCUGUUGUaGcAGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 68866 0.7 0.72578
Target:  5'- gCCCCgcgccGGAgAACAUCuUCGCGCAg-- -3'
miRNA:   3'- -GGGGa----CCUgUUGUAGcAGCGCGUguu -5'
25504 3' -55 NC_005337.1 + 67627 0.7 0.735776
Target:  5'- gUCCaucacGGACAGCAgcUgGUCGCGCGCGu -3'
miRNA:   3'- -GGGga---CCUGUUGU--AgCAGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 5861 0.7 0.735776
Target:  5'- cCCCCUGGugGGgAgCGUgGCGUugGGg -3'
miRNA:   3'- -GGGGACCugUUgUaGCAgCGCGugUU- -5'
25504 3' -55 NC_005337.1 + 96927 0.7 0.754503
Target:  5'- aCCCCaaccagaagaucgUGGugGACGaggugcUCGcCGCGCGCGAc -3'
miRNA:   3'- -GGGG-------------ACCugUUGU------AGCaGCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 115042 0.7 0.755478
Target:  5'- gCCCCUgccaGGGCAugGcCGUCGUGCuCAGc -3'
miRNA:   3'- -GGGGA----CCUGUugUaGCAGCGCGuGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.