miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25504 3' -55 NC_005337.1 + 132684 1.08 0.003798
Target:  5'- gCCCCUGGACAACAUCGUCGCGCACAAc -3'
miRNA:   3'- -GGGGACCUGUUGUAGCAGCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 86301 0.68 0.829027
Target:  5'- -gCCUGGACGcguccGCGcCGcacUCGCGCGCGAa -3'
miRNA:   3'- ggGGACCUGU-----UGUaGC---AGCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 105962 0.68 0.853793
Target:  5'- uUCCUGGACGACG-CG-CGCG-ACGAg -3'
miRNA:   3'- gGGGACCUGUUGUaGCaGCGCgUGUU- -5'
25504 3' -55 NC_005337.1 + 39435 0.65 0.927546
Target:  5'- gCCCgCUcGGGCcGCGcUCGgUGCGCACGAu -3'
miRNA:   3'- -GGG-GA-CCUGuUGU-AGCaGCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 103115 0.71 0.664387
Target:  5'- cCUCCcGGaguGCGGCAUCGUgCGCGCGCu- -3'
miRNA:   3'- -GGGGaCC---UGUUGUAGCA-GCGCGUGuu -5'
25504 3' -55 NC_005337.1 + 25184 0.71 0.685058
Target:  5'- gCCCUGGccucggccGCGGCcauguUCGUCGCGCuGCAGa -3'
miRNA:   3'- gGGGACC--------UGUUGu----AGCAGCGCG-UGUU- -5'
25504 3' -55 NC_005337.1 + 122987 0.7 0.715701
Target:  5'- aUCgUGGACGACAcCuUCGCGCACGu -3'
miRNA:   3'- gGGgACCUGUUGUaGcAGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 67627 0.7 0.735776
Target:  5'- gUCCaucacGGACAGCAgcUgGUCGCGCGCGu -3'
miRNA:   3'- -GGGga---CCUGUUGU--AgCAGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 102821 0.69 0.787898
Target:  5'- uCgCCUGGGCAACAagacgcgcgucauggUCGggcCGCGCGCc- -3'
miRNA:   3'- -GgGGACCUGUUGU---------------AGCa--GCGCGUGuu -5'
25504 3' -55 NC_005337.1 + 104539 0.68 0.820391
Target:  5'- gCCCgCUGGuccgccGCAACAcCG-CGCGCGCGu -3'
miRNA:   3'- -GGG-GACC------UGUUGUaGCaGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 19787 0.68 0.811578
Target:  5'- gCCgCUGGACucgGCGUCGUCGUaGgGCGGu -3'
miRNA:   3'- -GGgGACCUGu--UGUAGCAGCG-CgUGUU- -5'
25504 3' -55 NC_005337.1 + 72402 0.69 0.77473
Target:  5'- cCCCCggGGugGcGCGaCGUCGUGCACu- -3'
miRNA:   3'- -GGGGa-CCugU-UGUaGCAGCGCGUGuu -5'
25504 3' -55 NC_005337.1 + 56803 0.8 0.244763
Target:  5'- gCCCCgGGAC-GCGUCGcCGCGCACGc -3'
miRNA:   3'- -GGGGaCCUGuUGUAGCaGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 46019 0.68 0.811578
Target:  5'- aCCggCUGaaacauGGCGACGUCGUCGCGCAa-- -3'
miRNA:   3'- gGG--GAC------CUGUUGUAGCAGCGCGUguu -5'
25504 3' -55 NC_005337.1 + 126791 0.74 0.530349
Target:  5'- gCCCCgUGGACcugGACGUCGU-GCGCGCc- -3'
miRNA:   3'- -GGGG-ACCUG---UUGUAGCAgCGCGUGuu -5'
25504 3' -55 NC_005337.1 + 39014 0.69 0.77473
Target:  5'- -aCCUGGGCccgcGCGUCugccgCGCGCACGAg -3'
miRNA:   3'- ggGGACCUGu---UGUAGca---GCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 119914 0.68 0.811578
Target:  5'- aCCaCCUGGcgGGCAUCGUCGUggaguGCAUAGa -3'
miRNA:   3'- -GG-GGACCugUUGUAGCAGCG-----CGUGUU- -5'
25504 3' -55 NC_005337.1 + 130274 0.68 0.845736
Target:  5'- gCCCCaaGGACGugcGCAUCGUCcaaGCGCugcuCAAg -3'
miRNA:   3'- -GGGGa-CCUGU---UGUAGCAG---CGCGu---GUU- -5'
25504 3' -55 NC_005337.1 + 30073 0.72 0.622793
Target:  5'- uCCCCgaGGAUGGCGcggCGcUCGCGCACGGu -3'
miRNA:   3'- -GGGGa-CCUGUUGUa--GC-AGCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 124424 0.7 0.705547
Target:  5'- gUCCUGGGCAACGcCG-CGCGCGgGu -3'
miRNA:   3'- gGGGACCUGUUGUaGCaGCGCGUgUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.