miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25504 3' -55 NC_005337.1 + 95764 0.67 0.860867
Target:  5'- uCCCCgcgaucGcGGCGACGUCGUCGgccagcucggcgaCGCGCGg -3'
miRNA:   3'- -GGGGa-----C-CUGUUGUAGCAGC-------------GCGUGUu -5'
25504 3' -55 NC_005337.1 + 122533 0.68 0.853793
Target:  5'- gCCCUGGcGCGGCGaCG-CGCGCuGCAGc -3'
miRNA:   3'- gGGGACC-UGUUGUaGCaGCGCG-UGUU- -5'
25504 3' -55 NC_005337.1 + 99207 0.68 0.853793
Target:  5'- gCCCC--GACAGCGgcuUCuUCGCGCGCAu -3'
miRNA:   3'- -GGGGacCUGUUGU---AGcAGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 105962 0.68 0.853793
Target:  5'- uUCCUGGACGACG-CG-CGCG-ACGAg -3'
miRNA:   3'- gGGGACCUGUUGUaGCaGCGCgUGUU- -5'
25504 3' -55 NC_005337.1 + 54002 0.68 0.845736
Target:  5'- -gCC-GGAUcACcgCGUCGCGCACGc -3'
miRNA:   3'- ggGGaCCUGuUGuaGCAGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 130274 0.68 0.845736
Target:  5'- gCCCCaaGGACGugcGCAUCGUCcaaGCGCugcuCAAg -3'
miRNA:   3'- -GGGGa-CCUGU---UGUAGCAG---CGCGu---GUU- -5'
25504 3' -55 NC_005337.1 + 86301 0.68 0.829027
Target:  5'- -gCCUGGACGcguccGCGcCGcacUCGCGCGCGAa -3'
miRNA:   3'- ggGGACCUGU-----UGUaGC---AGCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 28294 0.68 0.829027
Target:  5'- aCCCCacgccGGugAccuCcUCGUCGCGCGCGu -3'
miRNA:   3'- -GGGGa----CCugUu--GuAGCAGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 83659 0.68 0.820391
Target:  5'- -aCCUGGACAGCAgccggcgcaggUCGUCGauCGCGGu -3'
miRNA:   3'- ggGGACCUGUUGU-----------AGCAGCgcGUGUU- -5'
25504 3' -55 NC_005337.1 + 104539 0.68 0.820391
Target:  5'- gCCCgCUGGuccgccGCAACAcCG-CGCGCGCGu -3'
miRNA:   3'- -GGG-GACC------UGUUGUaGCaGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 119914 0.68 0.811578
Target:  5'- aCCaCCUGGcgGGCAUCGUCGUggaguGCAUAGa -3'
miRNA:   3'- -GG-GGACCugUUGUAGCAGCG-----CGUGUU- -5'
25504 3' -55 NC_005337.1 + 19787 0.68 0.811578
Target:  5'- gCCgCUGGACucgGCGUCGUCGUaGgGCGGu -3'
miRNA:   3'- -GGgGACCUGu--UGUAGCAGCG-CgUGUU- -5'
25504 3' -55 NC_005337.1 + 46019 0.68 0.811578
Target:  5'- aCCggCUGaaacauGGCGACGUCGUCGCGCAa-- -3'
miRNA:   3'- gGG--GAC------CUGUUGUAGCAGCGCGUguu -5'
25504 3' -55 NC_005337.1 + 90389 0.68 0.811578
Target:  5'- gCCgUGGuACGuguGCG-CGUCGCGCACGu -3'
miRNA:   3'- gGGgACC-UGU---UGUaGCAGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 117401 0.69 0.802596
Target:  5'- uCCCCgaGGACGACAUCGUggacuucgagagCGUGUcCAAc -3'
miRNA:   3'- -GGGGa-CCUGUUGUAGCA------------GCGCGuGUU- -5'
25504 3' -55 NC_005337.1 + 47592 0.69 0.802596
Target:  5'- gCCgCUGGGCGugGgcgaCGcCGCGCGCGc -3'
miRNA:   3'- -GGgGACCUGUugUa---GCaGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 86241 0.69 0.802596
Target:  5'- gCgUUGGGCAcCGUCGcgUUGCGCACGAa -3'
miRNA:   3'- gGgGACCUGUuGUAGC--AGCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 109767 0.69 0.802596
Target:  5'- -gCUUGGGCAcgggccgagcGCGUCGcCGCGCACc- -3'
miRNA:   3'- ggGGACCUGU----------UGUAGCaGCGCGUGuu -5'
25504 3' -55 NC_005337.1 + 39081 0.69 0.802596
Target:  5'- aCCagaUGGGCGACAUCGuggUCGCcgugGCGCGGa -3'
miRNA:   3'- gGGg--ACCUGUUGUAGC---AGCG----CGUGUU- -5'
25504 3' -55 NC_005337.1 + 102821 0.69 0.787898
Target:  5'- uCgCCUGGGCAACAagacgcgcgucauggUCGggcCGCGCGCc- -3'
miRNA:   3'- -GgGGACCUGUUGU---------------AGCa--GCGCGUGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.