miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25504 3' -55 NC_005337.1 + 117281 0.66 0.910291
Target:  5'- gCCCCgcccgauaUGuuCGACGUgGUCGCGUACGc -3'
miRNA:   3'- -GGGG--------ACcuGUUGUAgCAGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 130950 0.66 0.904048
Target:  5'- uUCCUGGACGccgGCGUggcCGUggaCGUGCGCAAc -3'
miRNA:   3'- gGGGACCUGU---UGUA---GCA---GCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 26697 0.66 0.904048
Target:  5'- gCCCgUGGACAGCA----CGCGgGCGAa -3'
miRNA:   3'- -GGGgACCUGUUGUagcaGCGCgUGUU- -5'
25504 3' -55 NC_005337.1 + 68955 0.66 0.897564
Target:  5'- aCgCgGGACAGCGgcaugCG-CGCGCGCAGc -3'
miRNA:   3'- gGgGaCCUGUUGUa----GCaGCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 55150 0.66 0.897564
Target:  5'- aUCCaGGACAccgACGUCuUCGUGCGCGu -3'
miRNA:   3'- gGGGaCCUGU---UGUAGcAGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 115653 0.67 0.893558
Target:  5'- aCCCCUccGGCAACGUCaUCcugcagauacuccgcGCGCACAAg -3'
miRNA:   3'- -GGGGAc-CUGUUGUAGcAG---------------CGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 52008 0.67 0.890841
Target:  5'- aCgCCgugacGGACGGCcgCG-CGCGCGCGGu -3'
miRNA:   3'- -GgGGa----CCUGUUGuaGCaGCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 95039 0.67 0.883882
Target:  5'- ----cGGGCAggaacgccugcGCGUUGUCGCGCACGc -3'
miRNA:   3'- ggggaCCUGU-----------UGUAGCAGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 29366 0.67 0.883882
Target:  5'- gCCCUcGACGGCGgcCGUCGCgGCGCu- -3'
miRNA:   3'- gGGGAcCUGUUGUa-GCAGCG-CGUGuu -5'
25504 3' -55 NC_005337.1 + 63405 0.67 0.883882
Target:  5'- gCgCUGGACAugGcgcgcUCGUacaGCGCGCGGu -3'
miRNA:   3'- gGgGACCUGUugU-----AGCAg--CGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 66302 0.67 0.883882
Target:  5'- aCCCUGGACcGCGUgagCGcCGCGguCGc -3'
miRNA:   3'- gGGGACCUGuUGUA---GCaGCGCguGUu -5'
25504 3' -55 NC_005337.1 + 24306 0.67 0.883882
Target:  5'- cUCgUUGGACAcgcgggACAUCGUCGacggcaGCACGGa -3'
miRNA:   3'- -GGgGACCUGU------UGUAGCAGCg-----CGUGUU- -5'
25504 3' -55 NC_005337.1 + 58851 0.67 0.876693
Target:  5'- -aCCUGGACuuCGcgCGcUCGCGCGCc- -3'
miRNA:   3'- ggGGACCUGuuGUa-GC-AGCGCGUGuu -5'
25504 3' -55 NC_005337.1 + 118923 0.67 0.872271
Target:  5'- gCgCCUGGaagcgucgcgcgggcGCAGCGUgCGUCGCGCGa-- -3'
miRNA:   3'- -GgGGACC---------------UGUUGUA-GCAGCGCGUguu -5'
25504 3' -55 NC_005337.1 + 16952 0.67 0.869278
Target:  5'- gCCCUGGAgAACccgaCG-CGUGCGCGGa -3'
miRNA:   3'- gGGGACCUgUUGua--GCaGCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 79101 0.67 0.869278
Target:  5'- gCCCaccGGC-ACGUCGUCGaCGCGCAc -3'
miRNA:   3'- gGGGac-CUGuUGUAGCAGC-GCGUGUu -5'
25504 3' -55 NC_005337.1 + 84249 0.67 0.869278
Target:  5'- uUCCUGGACGACGUgugCGUCGaCGUg--- -3'
miRNA:   3'- gGGGACCUGUUGUA---GCAGC-GCGuguu -5'
25504 3' -55 NC_005337.1 + 80081 0.67 0.869278
Target:  5'- aCCC-GGACGACGUCcGgugCGCGUGCc- -3'
miRNA:   3'- gGGGaCCUGUUGUAG-Ca--GCGCGUGuu -5'
25504 3' -55 NC_005337.1 + 87603 0.67 0.861643
Target:  5'- gCCgCUcGGGCGACugcugcgCGaUCGCGCGCAGc -3'
miRNA:   3'- -GGgGA-CCUGUUGua-----GC-AGCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 18580 0.67 0.861643
Target:  5'- aCCUUGuuGACGGCGUUGUCcgacuuguGCGCGCGGa -3'
miRNA:   3'- gGGGAC--CUGUUGUAGCAG--------CGCGUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.