miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25504 5' -57.9 NC_005337.1 + 48342 0.67 0.732426
Target:  5'- aGCCggGCGC-CGGUGAacCAGgccGCGGUg -3'
miRNA:   3'- gCGGuaCGCGcGCCACUa-GUU---CGCCA- -5'
25504 5' -57.9 NC_005337.1 + 108994 0.67 0.732426
Target:  5'- cCGCCGUGCGCGCGaacucCAgcgccgcguuGGCGGa -3'
miRNA:   3'- -GCGGUACGCGCGCcacuaGU----------UCGCCa -5'
25504 5' -57.9 NC_005337.1 + 68334 0.67 0.746056
Target:  5'- aCGCgCGUGCccgugccggaggacgGCGCGGUcgcGAUCGcguggagcgagGGCGGUg -3'
miRNA:   3'- -GCG-GUACG---------------CGCGCCA---CUAGU-----------UCGCCA- -5'
25504 5' -57.9 NC_005337.1 + 99703 0.67 0.761393
Target:  5'- aCGCgcUGCGCGCGGccAUCGucGCGGa -3'
miRNA:   3'- -GCGguACGCGCGCCacUAGUu-CGCCa -5'
25504 5' -57.9 NC_005337.1 + 11388 0.67 0.769894
Target:  5'- aCGCCgaagucguucagcGUGCGCGCGGccGA-CAcggacAGCGGg -3'
miRNA:   3'- -GCGG-------------UACGCGCGCCa-CUaGU-----UCGCCa -5'
25504 5' -57.9 NC_005337.1 + 70796 0.67 0.770832
Target:  5'- gGCCAUGCG-GCGGcUGGU-GAGCGu- -3'
miRNA:   3'- gCGGUACGCgCGCC-ACUAgUUCGCca -5'
25504 5' -57.9 NC_005337.1 + 100051 0.67 0.770832
Target:  5'- gGaCCGUGCGCGUGGUcGAcguggcCAAGCuGGa -3'
miRNA:   3'- gC-GGUACGCGCGCCA-CUa-----GUUCG-CCa -5'
25504 5' -57.9 NC_005337.1 + 104974 0.67 0.770832
Target:  5'- -cCCAgaugaacGCGCGCGG-GAUCAAGaucaaGGUg -3'
miRNA:   3'- gcGGUa------CGCGCGCCaCUAGUUCg----CCA- -5'
25504 5' -57.9 NC_005337.1 + 98850 0.67 0.722584
Target:  5'- gCGCCGUGCGCGUcc--AUCGAGCaGUa -3'
miRNA:   3'- -GCGGUACGCGCGccacUAGUUCGcCA- -5'
25504 5' -57.9 NC_005337.1 + 18545 0.68 0.682536
Target:  5'- gCGCCAUGCGUGCGac-GUCGAagauGUGGUc -3'
miRNA:   3'- -GCGGUACGCGCGCcacUAGUU----CGCCA- -5'
25504 5' -57.9 NC_005337.1 + 70156 0.68 0.672398
Target:  5'- aCGCCAUGCGC-CGcGUGAgcCAGGCcGUc -3'
miRNA:   3'- -GCGGUACGCGcGC-CACUa-GUUCGcCA- -5'
25504 5' -57.9 NC_005337.1 + 6759 0.68 0.692632
Target:  5'- uCGCCAUGUagugcaGCGCGGUGuUCccGcCGGUg -3'
miRNA:   3'- -GCGGUACG------CGCGCCACuAGuuC-GCCA- -5'
25504 5' -57.9 NC_005337.1 + 3137 0.68 0.692632
Target:  5'- gCGuCCA-GCGCGCGGUcGAUgCAAGUGa- -3'
miRNA:   3'- -GC-GGUaCGCGCGCCA-CUA-GUUCGCca -5'
25504 5' -57.9 NC_005337.1 + 130817 0.68 0.682536
Target:  5'- aCGaCCcaGUGC-CGCcGUGAUCAGGCGGc -3'
miRNA:   3'- -GC-GG--UACGcGCGcCACUAGUUCGCCa -5'
25504 5' -57.9 NC_005337.1 + 76008 0.68 0.692632
Target:  5'- cCGCCGUGCGC-CGGUa--CAcGCGGa -3'
miRNA:   3'- -GCGGUACGCGcGCCAcuaGUuCGCCa -5'
25504 5' -57.9 NC_005337.1 + 100540 0.68 0.702679
Target:  5'- gCGCCAUGCGCcgGCGGU--UCAuGCGc- -3'
miRNA:   3'- -GCGGUACGCG--CGCCAcuAGUuCGCca -5'
25504 5' -57.9 NC_005337.1 + 123700 0.68 0.682536
Target:  5'- aCGCCGUGCG-GCGGcUGggCAcgcccguGCGGa -3'
miRNA:   3'- -GCGGUACGCgCGCC-ACuaGUu------CGCCa -5'
25504 5' -57.9 NC_005337.1 + 49716 0.68 0.692632
Target:  5'- gGCUcgGCGCGCc--GGUUGAGCGGg -3'
miRNA:   3'- gCGGuaCGCGCGccaCUAGUUCGCCa -5'
25504 5' -57.9 NC_005337.1 + 126128 0.68 0.668333
Target:  5'- aCGCCGUGCGCGCGGccaugcccGGCGu- -3'
miRNA:   3'- -GCGGUACGCGCGCCacuagu--UCGCca -5'
25504 5' -57.9 NC_005337.1 + 13068 0.68 0.662227
Target:  5'- uCGCUGcUGCGCGCGG-GcgCGgaAGCGGc -3'
miRNA:   3'- -GCGGU-ACGCGCGCCaCuaGU--UCGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.