miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25504 5' -57.9 NC_005337.1 + 121695 0.66 0.798375
Target:  5'- gCGCCAacgugaacGCGCGCGGgGA---GGCGGa -3'
miRNA:   3'- -GCGGUa-------CGCGCGCCaCUaguUCGCCa -5'
25504 5' -57.9 NC_005337.1 + 47956 0.66 0.798375
Target:  5'- aCGCCAUguucGCGCGCGaGUG--CGGcGCGGa -3'
miRNA:   3'- -GCGGUA----CGCGCGC-CACuaGUU-CGCCa -5'
25504 5' -57.9 NC_005337.1 + 42837 0.66 0.816002
Target:  5'- cCGCCcgcUGCGCGUGGUGGUgA--CGGn -3'
miRNA:   3'- -GCGGu--ACGCGCGCCACUAgUucGCCa -5'
25504 5' -57.9 NC_005337.1 + 128308 0.66 0.789332
Target:  5'- gCGCCGUcugcucGCGCGCGGcg--CGAGCGcGa -3'
miRNA:   3'- -GCGGUA------CGCGCGCCacuaGUUCGC-Ca -5'
25504 5' -57.9 NC_005337.1 + 132101 0.66 0.789332
Target:  5'- gCGCCGUGCGCGuCGGcGccgUgcGCGGc -3'
miRNA:   3'- -GCGGUACGCGC-GCCaCua-GuuCGCCa -5'
25504 5' -57.9 NC_005337.1 + 56646 0.66 0.806385
Target:  5'- aCGCUG-GCGCGCaaGGUGAUUAAGaagauggaggacaCGGUg -3'
miRNA:   3'- -GCGGUaCGCGCG--CCACUAGUUC-------------GCCA- -5'
25504 5' -57.9 NC_005337.1 + 131344 0.67 0.751839
Target:  5'- gCGCCGUGCGCGuCGGcacUCcGGCGa- -3'
miRNA:   3'- -GCGGUACGCGC-GCCacuAGuUCGCca -5'
25504 5' -57.9 NC_005337.1 + 120465 0.67 0.74218
Target:  5'- gCGCuCGaGCGCGCGcugGAUCGcGCGGa -3'
miRNA:   3'- -GCG-GUaCGCGCGCca-CUAGUuCGCCa -5'
25504 5' -57.9 NC_005337.1 + 68334 0.67 0.746056
Target:  5'- aCGCgCGUGCccgugccggaggacgGCGCGGUcgcGAUCGcguggagcgagGGCGGUg -3'
miRNA:   3'- -GCG-GUACG---------------CGCGCCA---CUAGU-----------UCGCCA- -5'
25504 5' -57.9 NC_005337.1 + 108994 0.67 0.732426
Target:  5'- cCGCCGUGCGCGCGaacucCAgcgccgcguuGGCGGa -3'
miRNA:   3'- -GCGGUACGCGCGCcacuaGU----------UCGCCa -5'
25504 5' -57.9 NC_005337.1 + 76808 0.67 0.732426
Target:  5'- uGagGUGCGCGCGcuugaUGcgCAGGCGGUg -3'
miRNA:   3'- gCggUACGCGCGCc----ACuaGUUCGCCA- -5'
25504 5' -57.9 NC_005337.1 + 127972 0.67 0.732426
Target:  5'- gCGCCAUGCGCGaGGUGcgCu-GCa-- -3'
miRNA:   3'- -GCGGUACGCGCgCCACuaGuuCGcca -5'
25504 5' -57.9 NC_005337.1 + 77413 0.67 0.74218
Target:  5'- uCGCCAUGCGCugGCGGUG--CAuGCGc- -3'
miRNA:   3'- -GCGGUACGCG--CGCCACuaGUuCGCca -5'
25504 5' -57.9 NC_005337.1 + 128485 0.67 0.751839
Target:  5'- uCGuCCcUGCGgGCGGUcGG-CGAGUGGUg -3'
miRNA:   3'- -GC-GGuACGCgCGCCA-CUaGUUCGCCA- -5'
25504 5' -57.9 NC_005337.1 + 37220 0.67 0.761393
Target:  5'- gCGCCGcgcGUGCGUGGcGAUgAGGUGGc -3'
miRNA:   3'- -GCGGUa--CGCGCGCCaCUAgUUCGCCa -5'
25504 5' -57.9 NC_005337.1 + 86674 0.67 0.761393
Target:  5'- gGCCGcGCGCGCGGc-GUCGcccacgcccAGCGGc -3'
miRNA:   3'- gCGGUaCGCGCGCCacUAGU---------UCGCCa -5'
25504 5' -57.9 NC_005337.1 + 123615 0.67 0.761393
Target:  5'- cCGCCGgccgGCGCGCGGUccauagacGAacUCAaccAGUGGc -3'
miRNA:   3'- -GCGGUa---CGCGCGCCA--------CU--AGU---UCGCCa -5'
25504 5' -57.9 NC_005337.1 + 98850 0.67 0.722584
Target:  5'- gCGCCGUGCGCGUcc--AUCGAGCaGUa -3'
miRNA:   3'- -GCGGUACGCGCGccacUAGUUCGcCA- -5'
25504 5' -57.9 NC_005337.1 + 42745 0.67 0.731445
Target:  5'- gCGCCGaGCGUGCGGUGcgggucccGcgcguucgugugcUCGGGCGGc -3'
miRNA:   3'- -GCGGUaCGCGCGCCAC--------U-------------AGUUCGCCa -5'
25504 5' -57.9 NC_005337.1 + 48342 0.67 0.732426
Target:  5'- aGCCggGCGC-CGGUGAacCAGgccGCGGUg -3'
miRNA:   3'- gCGGuaCGCGcGCCACUa-GUU---CGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.