miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25504 5' -57.9 NC_005337.1 + 40539 0.78 0.204729
Target:  5'- cCGCCGcgGCGCGCGGUGGU---GCGGUu -3'
miRNA:   3'- -GCGGUa-CGCGCGCCACUAguuCGCCA- -5'
25504 5' -57.9 NC_005337.1 + 42620 0.75 0.29354
Target:  5'- cCGCCAUGUGCggcaccGCGGUGGUCGA-CGGc -3'
miRNA:   3'- -GCGGUACGCG------CGCCACUAGUUcGCCa -5'
25504 5' -57.9 NC_005337.1 + 42745 0.67 0.731445
Target:  5'- gCGCCGaGCGUGCGGUGcgggucccGcgcguucgugugcUCGGGCGGc -3'
miRNA:   3'- -GCGGUaCGCGCGCCAC--------U-------------AGUUCGCCa -5'
25504 5' -57.9 NC_005337.1 + 42837 0.66 0.816002
Target:  5'- cCGCCcgcUGCGCGUGGUGGUgA--CGGn -3'
miRNA:   3'- -GCGGu--ACGCGCGCCACUAgUucGCCa -5'
25504 5' -57.9 NC_005337.1 + 42863 0.68 0.662227
Target:  5'- aCGCC-UGCGUGacgaaGGUGcUgGAGCGGg -3'
miRNA:   3'- -GCGGuACGCGCg----CCACuAgUUCGCCa -5'
25504 5' -57.9 NC_005337.1 + 47956 0.66 0.798375
Target:  5'- aCGCCAUguucGCGCGCGaGUG--CGGcGCGGa -3'
miRNA:   3'- -GCGGUA----CGCGCGC-CACuaGUU-CGCCa -5'
25504 5' -57.9 NC_005337.1 + 48342 0.67 0.732426
Target:  5'- aGCCggGCGC-CGGUGAacCAGgccGCGGUg -3'
miRNA:   3'- gCGGuaCGCGcGCCACUa-GUU---CGCCA- -5'
25504 5' -57.9 NC_005337.1 + 49716 0.68 0.692632
Target:  5'- gGCUcgGCGCGCc--GGUUGAGCGGg -3'
miRNA:   3'- gCGGuaCGCGCGccaCUAGUUCGCCa -5'
25504 5' -57.9 NC_005337.1 + 50405 0.71 0.501378
Target:  5'- gCGCC--GCGCGuCGGUGAcgGAGCGGc -3'
miRNA:   3'- -GCGGuaCGCGC-GCCACUagUUCGCCa -5'
25504 5' -57.9 NC_005337.1 + 56646 0.66 0.806385
Target:  5'- aCGCUG-GCGCGCaaGGUGAUUAAGaagauggaggacaCGGUg -3'
miRNA:   3'- -GCGGUaCGCGCG--CCACUAGUUC-------------GCCA- -5'
25504 5' -57.9 NC_005337.1 + 65997 0.67 0.761393
Target:  5'- gGCCGUGCGUcCcGUGggCGAGCGcGUg -3'
miRNA:   3'- gCGGUACGCGcGcCACuaGUUCGC-CA- -5'
25504 5' -57.9 NC_005337.1 + 66627 0.71 0.511057
Target:  5'- aCGCCuuucggGCGgGCGGUGG--GAGUGGUg -3'
miRNA:   3'- -GCGGua----CGCgCGCCACUagUUCGCCA- -5'
25504 5' -57.9 NC_005337.1 + 68334 0.67 0.746056
Target:  5'- aCGCgCGUGCccgugccggaggacgGCGCGGUcgcGAUCGcguggagcgagGGCGGUg -3'
miRNA:   3'- -GCG-GUACG---------------CGCGCCA---CUAGU-----------UCGCCA- -5'
25504 5' -57.9 NC_005337.1 + 69283 0.66 0.807267
Target:  5'- cCGCCGcGCGCGaCGGgcaguUCGcGCGGg -3'
miRNA:   3'- -GCGGUaCGCGC-GCCacu--AGUuCGCCa -5'
25504 5' -57.9 NC_005337.1 + 70156 0.68 0.672398
Target:  5'- aCGCCAUGCGC-CGcGUGAgcCAGGCcGUc -3'
miRNA:   3'- -GCGGUACGCGcGC-CACUa-GUUCGcCA- -5'
25504 5' -57.9 NC_005337.1 + 70796 0.67 0.770832
Target:  5'- gGCCAUGCG-GCGGcUGGU-GAGCGu- -3'
miRNA:   3'- gCGGUACGCgCGCC-ACUAgUUCGCca -5'
25504 5' -57.9 NC_005337.1 + 72469 0.66 0.807267
Target:  5'- cCGCCAUGCGCGUGGac-----GUGGa -3'
miRNA:   3'- -GCGGUACGCGCGCCacuaguuCGCCa -5'
25504 5' -57.9 NC_005337.1 + 74216 0.74 0.352065
Target:  5'- cCGCCGUGCuuGCgGCGGaUGAUCGggagGGCGGg -3'
miRNA:   3'- -GCGGUACG--CG-CGCC-ACUAGU----UCGCCa -5'
25504 5' -57.9 NC_005337.1 + 76008 0.68 0.692632
Target:  5'- cCGCCGUGCGC-CGGUa--CAcGCGGa -3'
miRNA:   3'- -GCGGUACGCGcGCCAcuaGUuCGCCa -5'
25504 5' -57.9 NC_005337.1 + 76397 0.66 0.798375
Target:  5'- -aCCGUGCGCGCGGgGcgCuGGCGc- -3'
miRNA:   3'- gcGGUACGCGCGCCaCuaGuUCGCca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.