miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25504 5' -57.9 NC_005337.1 + 80270 0.7 0.580669
Target:  5'- uGCgCGUGCGCgacGCGGUGAUCcGGCu-- -3'
miRNA:   3'- gCG-GUACGCG---CGCCACUAGuUCGcca -5'
25504 5' -57.9 NC_005337.1 + 36511 0.7 0.59081
Target:  5'- uCGCgCA-GCGCGCGcGUGAUCucGGgGGUc -3'
miRNA:   3'- -GCG-GUaCGCGCGC-CACUAGu-UCgCCA- -5'
25504 5' -57.9 NC_005337.1 + 100685 0.7 0.59081
Target:  5'- gCGCCGcGCGCGCGGccGAcgCGAcGCGGc -3'
miRNA:   3'- -GCGGUaCGCGCGCCa-CUa-GUU-CGCCa -5'
25504 5' -57.9 NC_005337.1 + 80143 0.69 0.600981
Target:  5'- aGCCAUGCGCGCGGc------GCGGc -3'
miRNA:   3'- gCGGUACGCGCGCCacuaguuCGCCa -5'
25504 5' -57.9 NC_005337.1 + 42863 0.68 0.662227
Target:  5'- aCGCC-UGCGUGacgaaGGUGcUgGAGCGGg -3'
miRNA:   3'- -GCGGuACGCGCg----CCACuAgUUCGCCa -5'
25504 5' -57.9 NC_005337.1 + 13068 0.68 0.662227
Target:  5'- uCGCUGcUGCGCGCGG-GcgCGgaAGCGGc -3'
miRNA:   3'- -GCGGU-ACGCGCGCCaCuaGU--UCGCCa -5'
25504 5' -57.9 NC_005337.1 + 88250 0.68 0.662227
Target:  5'- aCGUCGUGCGUGcCGGcGcgCcGGCGGg -3'
miRNA:   3'- -GCGGUACGCGC-GCCaCuaGuUCGCCa -5'
25504 5' -57.9 NC_005337.1 + 126128 0.68 0.668333
Target:  5'- aCGCCGUGCGCGCGGccaugcccGGCGu- -3'
miRNA:   3'- -GCGGUACGCGCGCCacuagu--UCGCca -5'
25504 5' -57.9 NC_005337.1 + 70156 0.68 0.672398
Target:  5'- aCGCCAUGCGC-CGcGUGAgcCAGGCcGUc -3'
miRNA:   3'- -GCGGUACGCGcGC-CACUa-GUUCGcCA- -5'
25504 5' -57.9 NC_005337.1 + 18545 0.68 0.682536
Target:  5'- gCGCCAUGCGUGCGac-GUCGAagauGUGGUc -3'
miRNA:   3'- -GCGGUACGCGCGCcacUAGUU----CGCCA- -5'
25504 5' -57.9 NC_005337.1 + 130817 0.68 0.682536
Target:  5'- aCGaCCcaGUGC-CGCcGUGAUCAGGCGGc -3'
miRNA:   3'- -GC-GG--UACGcGCGcCACUAGUUCGCCa -5'
25504 5' -57.9 NC_005337.1 + 123700 0.68 0.682536
Target:  5'- aCGCCGUGCG-GCGGcUGggCAcgcccguGCGGa -3'
miRNA:   3'- -GCGGUACGCgCGCC-ACuaGUu------CGCCa -5'
25504 5' -57.9 NC_005337.1 + 76008 0.68 0.692632
Target:  5'- cCGCCGUGCGC-CGGUa--CAcGCGGa -3'
miRNA:   3'- -GCGGUACGCGcGCCAcuaGUuCGCCa -5'
25504 5' -57.9 NC_005337.1 + 49716 0.68 0.692632
Target:  5'- gGCUcgGCGCGCc--GGUUGAGCGGg -3'
miRNA:   3'- gCGGuaCGCGCGccaCUAGUUCGCCa -5'
25504 5' -57.9 NC_005337.1 + 6759 0.68 0.692632
Target:  5'- uCGCCAUGUagugcaGCGCGGUGuUCccGcCGGUg -3'
miRNA:   3'- -GCGGUACG------CGCGCCACuAGuuC-GCCA- -5'
25504 5' -57.9 NC_005337.1 + 3137 0.68 0.692632
Target:  5'- gCGuCCA-GCGCGCGGUcGAUgCAAGUGa- -3'
miRNA:   3'- -GC-GGUaCGCGCGCCA-CUA-GUUCGCca -5'
25504 5' -57.9 NC_005337.1 + 100540 0.68 0.702679
Target:  5'- gCGCCAUGCGCcgGCGGU--UCAuGCGc- -3'
miRNA:   3'- -GCGGUACGCG--CGCCAcuAGUuCGCca -5'
25504 5' -57.9 NC_005337.1 + 106022 0.68 0.702679
Target:  5'- aCGCaCGUGCGCGUGGUGccgcgCGA-CGGc -3'
miRNA:   3'- -GCG-GUACGCGCGCCACua---GUUcGCCa -5'
25504 5' -57.9 NC_005337.1 + 98850 0.67 0.722584
Target:  5'- gCGCCGUGCGCGUcc--AUCGAGCaGUa -3'
miRNA:   3'- -GCGGUACGCGCGccacUAGUUCGcCA- -5'
25504 5' -57.9 NC_005337.1 + 42745 0.67 0.731445
Target:  5'- gCGCCGaGCGUGCGGUGcgggucccGcgcguucgugugcUCGGGCGGc -3'
miRNA:   3'- -GCGGUaCGCGCGCCAC--------U-------------AGUUCGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.