miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25504 5' -57.9 NC_005337.1 + 132101 0.66 0.789332
Target:  5'- gCGCCGUGCGCGuCGGcGccgUgcGCGGc -3'
miRNA:   3'- -GCGGUACGCGC-GCCaCua-GuuCGCCa -5'
25504 5' -57.9 NC_005337.1 + 120517 0.66 0.789332
Target:  5'- uCGCCGcguucggGCGCGCGGaGAUCAcGCu-- -3'
miRNA:   3'- -GCGGUa------CGCGCGCCaCUAGUuCGcca -5'
25504 5' -57.9 NC_005337.1 + 129704 0.66 0.780148
Target:  5'- uCGCCGcGCcCGCGGcagcaGAUCAuGCGGg -3'
miRNA:   3'- -GCGGUaCGcGCGCCa----CUAGUuCGCCa -5'
25504 5' -57.9 NC_005337.1 + 821 0.66 0.780148
Target:  5'- aGCCGUccgcGCGCGCGGgcccgGGcUCGacgaaggcGGCGGg -3'
miRNA:   3'- gCGGUA----CGCGCGCCa----CU-AGU--------UCGCCa -5'
25504 5' -57.9 NC_005337.1 + 821 0.66 0.780148
Target:  5'- aGCCGUccgcGCGCGCGGgcccgGGcUCGacgaaggcGGCGGg -3'
miRNA:   3'- gCGGUA----CGCGCGCCa----CU-AGU--------UCGCCa -5'
25504 5' -57.9 NC_005337.1 + 99202 0.66 0.776437
Target:  5'- gCGCCGgagacgcguucucGCGCGCGGacuUCGAcGCGGUc -3'
miRNA:   3'- -GCGGUa------------CGCGCGCCacuAGUU-CGCCA- -5'
25504 5' -57.9 NC_005337.1 + 100051 0.67 0.770832
Target:  5'- gGaCCGUGCGCGUGGUcGAcguggcCAAGCuGGa -3'
miRNA:   3'- gC-GGUACGCGCGCCA-CUa-----GUUCG-CCa -5'
25504 5' -57.9 NC_005337.1 + 70796 0.67 0.770832
Target:  5'- gGCCAUGCG-GCGGcUGGU-GAGCGu- -3'
miRNA:   3'- gCGGUACGCgCGCC-ACUAgUUCGCca -5'
25504 5' -57.9 NC_005337.1 + 11909 0.67 0.770832
Target:  5'- aCGCaCAUGCGCGUGGc-GUCcgauGCGGc -3'
miRNA:   3'- -GCG-GUACGCGCGCCacUAGuu--CGCCa -5'
25504 5' -57.9 NC_005337.1 + 104974 0.67 0.770832
Target:  5'- -cCCAgaugaacGCGCGCGG-GAUCAAGaucaaGGUg -3'
miRNA:   3'- gcGGUa------CGCGCGCCaCUAGUUCg----CCA- -5'
25504 5' -57.9 NC_005337.1 + 11388 0.67 0.769894
Target:  5'- aCGCCgaagucguucagcGUGCGCGCGGccGA-CAcggacAGCGGg -3'
miRNA:   3'- -GCGG-------------UACGCGCGCCa-CUaGU-----UCGCCa -5'
25504 5' -57.9 NC_005337.1 + 65997 0.67 0.761393
Target:  5'- gGCCGUGCGUcCcGUGggCGAGCGcGUg -3'
miRNA:   3'- gCGGUACGCGcGcCACuaGUUCGC-CA- -5'
25504 5' -57.9 NC_005337.1 + 123615 0.67 0.761393
Target:  5'- cCGCCGgccgGCGCGCGGUccauagacGAacUCAaccAGUGGc -3'
miRNA:   3'- -GCGGUa---CGCGCGCCA--------CU--AGU---UCGCCa -5'
25504 5' -57.9 NC_005337.1 + 86674 0.67 0.761393
Target:  5'- gGCCGcGCGCGCGGc-GUCGcccacgcccAGCGGc -3'
miRNA:   3'- gCGGUaCGCGCGCCacUAGU---------UCGCCa -5'
25504 5' -57.9 NC_005337.1 + 99703 0.67 0.761393
Target:  5'- aCGCgcUGCGCGCGGccAUCGucGCGGa -3'
miRNA:   3'- -GCGguACGCGCGCCacUAGUu-CGCCa -5'
25504 5' -57.9 NC_005337.1 + 37220 0.67 0.761393
Target:  5'- gCGCCGcgcGUGCGUGGcGAUgAGGUGGc -3'
miRNA:   3'- -GCGGUa--CGCGCGCCaCUAgUUCGCCa -5'
25504 5' -57.9 NC_005337.1 + 131344 0.67 0.751839
Target:  5'- gCGCCGUGCGCGuCGGcacUCcGGCGa- -3'
miRNA:   3'- -GCGGUACGCGC-GCCacuAGuUCGCca -5'
25504 5' -57.9 NC_005337.1 + 128485 0.67 0.751839
Target:  5'- uCGuCCcUGCGgGCGGUcGG-CGAGUGGUg -3'
miRNA:   3'- -GC-GGuACGCgCGCCA-CUaGUUCGCCA- -5'
25504 5' -57.9 NC_005337.1 + 107153 0.67 0.751839
Target:  5'- aCGCUGcUGCGCGUGGc---CAAGCGGc -3'
miRNA:   3'- -GCGGU-ACGCGCGCCacuaGUUCGCCa -5'
25504 5' -57.9 NC_005337.1 + 68334 0.67 0.746056
Target:  5'- aCGCgCGUGCccgugccggaggacgGCGCGGUcgcGAUCGcguggagcgagGGCGGUg -3'
miRNA:   3'- -GCG-GUACG---------------CGCGCCA---CUAGU-----------UCGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.