miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25504 5' -57.9 NC_005337.1 + 120465 0.67 0.74218
Target:  5'- gCGCuCGaGCGCGCGcugGAUCGcGCGGa -3'
miRNA:   3'- -GCG-GUaCGCGCGCca-CUAGUuCGCCa -5'
25504 5' -57.9 NC_005337.1 + 77413 0.67 0.74218
Target:  5'- uCGCCAUGCGCugGCGGUG--CAuGCGc- -3'
miRNA:   3'- -GCGGUACGCG--CGCCACuaGUuCGCca -5'
25504 5' -57.9 NC_005337.1 + 127972 0.67 0.732426
Target:  5'- gCGCCAUGCGCGaGGUGcgCu-GCa-- -3'
miRNA:   3'- -GCGGUACGCGCgCCACuaGuuCGcca -5'
25504 5' -57.9 NC_005337.1 + 76808 0.67 0.732426
Target:  5'- uGagGUGCGCGCGcuugaUGcgCAGGCGGUg -3'
miRNA:   3'- gCggUACGCGCGCc----ACuaGUUCGCCA- -5'
25504 5' -57.9 NC_005337.1 + 4388 0.67 0.732426
Target:  5'- cCGCCAUGUGCaGCGGcGAgaugccguaUCGAG-GGUu -3'
miRNA:   3'- -GCGGUACGCG-CGCCaCU---------AGUUCgCCA- -5'
25504 5' -57.9 NC_005337.1 + 108994 0.67 0.732426
Target:  5'- cCGCCGUGCGCGCGaacucCAgcgccgcguuGGCGGa -3'
miRNA:   3'- -GCGGUACGCGCGCcacuaGU----------UCGCCa -5'
25504 5' -57.9 NC_005337.1 + 48342 0.67 0.732426
Target:  5'- aGCCggGCGC-CGGUGAacCAGgccGCGGUg -3'
miRNA:   3'- gCGGuaCGCGcGCCACUa-GUU---CGCCA- -5'
25504 5' -57.9 NC_005337.1 + 42745 0.67 0.731445
Target:  5'- gCGCCGaGCGUGCGGUGcgggucccGcgcguucgugugcUCGGGCGGc -3'
miRNA:   3'- -GCGGUaCGCGCGCCAC--------U-------------AGUUCGCCa -5'
25504 5' -57.9 NC_005337.1 + 98850 0.67 0.722584
Target:  5'- gCGCCGUGCGCGUcc--AUCGAGCaGUa -3'
miRNA:   3'- -GCGGUACGCGCGccacUAGUUCGcCA- -5'
25504 5' -57.9 NC_005337.1 + 106022 0.68 0.702679
Target:  5'- aCGCaCGUGCGCGUGGUGccgcgCGA-CGGc -3'
miRNA:   3'- -GCG-GUACGCGCGCCACua---GUUcGCCa -5'
25504 5' -57.9 NC_005337.1 + 100540 0.68 0.702679
Target:  5'- gCGCCAUGCGCcgGCGGU--UCAuGCGc- -3'
miRNA:   3'- -GCGGUACGCG--CGCCAcuAGUuCGCca -5'
25504 5' -57.9 NC_005337.1 + 76008 0.68 0.692632
Target:  5'- cCGCCGUGCGC-CGGUa--CAcGCGGa -3'
miRNA:   3'- -GCGGUACGCGcGCCAcuaGUuCGCCa -5'
25504 5' -57.9 NC_005337.1 + 3137 0.68 0.692632
Target:  5'- gCGuCCA-GCGCGCGGUcGAUgCAAGUGa- -3'
miRNA:   3'- -GC-GGUaCGCGCGCCA-CUA-GUUCGCca -5'
25504 5' -57.9 NC_005337.1 + 49716 0.68 0.692632
Target:  5'- gGCUcgGCGCGCc--GGUUGAGCGGg -3'
miRNA:   3'- gCGGuaCGCGCGccaCUAGUUCGCCa -5'
25504 5' -57.9 NC_005337.1 + 6759 0.68 0.692632
Target:  5'- uCGCCAUGUagugcaGCGCGGUGuUCccGcCGGUg -3'
miRNA:   3'- -GCGGUACG------CGCGCCACuAGuuC-GCCA- -5'
25504 5' -57.9 NC_005337.1 + 18545 0.68 0.682536
Target:  5'- gCGCCAUGCGUGCGac-GUCGAagauGUGGUc -3'
miRNA:   3'- -GCGGUACGCGCGCcacUAGUU----CGCCA- -5'
25504 5' -57.9 NC_005337.1 + 123700 0.68 0.682536
Target:  5'- aCGCCGUGCG-GCGGcUGggCAcgcccguGCGGa -3'
miRNA:   3'- -GCGGUACGCgCGCC-ACuaGUu------CGCCa -5'
25504 5' -57.9 NC_005337.1 + 130817 0.68 0.682536
Target:  5'- aCGaCCcaGUGC-CGCcGUGAUCAGGCGGc -3'
miRNA:   3'- -GC-GG--UACGcGCGcCACUAGUUCGCCa -5'
25504 5' -57.9 NC_005337.1 + 70156 0.68 0.672398
Target:  5'- aCGCCAUGCGC-CGcGUGAgcCAGGCcGUc -3'
miRNA:   3'- -GCGGUACGCGcGC-CACUa-GUUCGcCA- -5'
25504 5' -57.9 NC_005337.1 + 126128 0.68 0.668333
Target:  5'- aCGCCGUGCGCGCGGccaugcccGGCGu- -3'
miRNA:   3'- -GCGGUACGCGCGCCacuagu--UCGCca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.